DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and Abl1

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001094320.1 Gene:Abl1 / 311860 RGDID:1584969 Length:1143 Species:Rattus norvegicus


Alignment Length:391 Identity:139/391 - (35%)
Similarity:214/391 - (54%) Gaps:44/391 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   955 LYEEEWFHGVLPREEVVRLLNN--DGDFLVRETIRNEESQIVLSVCWNGH-KHFIVQTTGEGNFR 1016
            |.:..|:||.:.|.....||::  :|.|||||: .:...|..:|:.:.|. .|:.:.|..:|...
  Rat   141 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRES-ESSPGQRSISLRYEGRVYHYRINTASDGKLY 204

  Fly  1017 FEGPP-FASIQELIMHQYHSELPVTVKSGAI--LRRPVCR-------------ERWELSNDDVVL 1065
            ..... |.::.||:.|  ||    ||..|.|  |..|..:             ::||:...|:.:
  Rat   205 VSSESRFNTLAELVHH--HS----TVADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDITM 263

  Fly  1066 LERIGRGNFGDVYKAKLKSTKLDVAVKTCRM-TLPDEQKRKFLQEGRILKQYDHPNIVKLIGICV 1129
            ..::|.|.:|:||:...|...|.|||||.:. |:..|:   ||:|..::|:..|||:|:|:|:|.
  Rat   264 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE---FLKEAAVMKEIKHPNLVQLLGVCT 325

  Fly  1130 QKQPIMIVMELVLGGSLLTYLRKNSNGLTTRQQMG------MCRDAAAGMRYLESKNCIHRDLAA 1188
            ::.|..|:.|.:..|:||.|||:     ..||::.      |....::.|.|||.||.|||||||
  Rat   326 REPPFYIITEFMTYGNLLDYLRE-----CNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAA 385

  Fly  1189 RNCLVDLEHSVKISDFGMSR--EEEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGILMW 1251
            |||||...|.||::|||:||  ..:.|....|.| .|:||||||:|.:.|::...|||::|:|:|
  Rat   386 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK-FPIKWTAPESLAYNKFSIKSDVWAFGVLLW 449

  Fly  1252 EIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEIYNVVDA 1316
            ||.:.|.:||.|:..|:..|.::..|||..|:..||::|.||..||..:...||.|.||:...:.
  Rat   450 EIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFET 514

  Fly  1317 L 1317
            :
  Rat   515 M 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 25/87 (29%)
TyrKc 1063..1311 CDD:197581 104/256 (41%)
PTKc_Fes_like 1067..1315 CDD:270637 105/256 (41%)
Abl1NP_001094320.1 SH3_Abl 84..137 CDD:212784
SH2_ABL 142..235 CDD:198189 29/99 (29%)
PTKc_Abl 254..516 CDD:270645 108/271 (40%)
Pkinase_Tyr 261..512 CDD:285015 105/259 (41%)
FABD 1019..1143 CDD:197885
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100013
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.