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Protein Alignment FER and Limk2

DIOPT Version :9

Sequence 1:	NP_524288.3	Gene:	FER / 41118	FlyBaseID:	FBgn0000723	Length:	1325	Species:	Drosophila melanogaster
Sequence 2:	XP_008768497.1	Gene:	Limk2 / 29524	RGDID:	62056	Length:	643	Species:	Rattus norvegicus

Alignment Length:	315	Identity:	86/315 - (27%)
Similarity:	143/315 - (45%)	Gaps:	57/315 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly  1038 PVTVKSGAILRRPVCR-ERWELSND---------DVVLLERIGRGNFGDVYKAKLKSTKLDVAVK 1092
            |.:.|...:|.|.:.| |....|:.         |::..|.:|:|.||...|...|:|...:.:|
  Rat   296 PSSPKEPLLLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMK 360

  Fly  1093 TCRMTLPDEQKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSLLTYLRKNSNGL 1157
            .. :...:|.::.||.|.::::..||||::|.||:..:.:.:.::.|.:.||:|..:|| |.:..
  Rat   361 EL-IRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLR-NVDPF 423

  Fly  1158 TTRQQMGMCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKISDFGMSREEEEYIVSDGMKQI 1222
            ..:|::...:..|:||.||.|...|||||.:.|||:.|:.:|.::|||:||     ::.:..|:.
  Rat   424 PWQQKVRFAKGIASGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSR-----LIVEERKRP 483

  Fly  1223 PVK-------------------------WTAPEALNFGKYTSLCDVWSYGILMWEIFSK--GDTP 1260
            ||:                         |.|||.||...|....||:|:||::.||..:  .|..
  Rat   484 PVEKAATKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPD 548

  Fly  1261 YSGMTNSRARERIDTGYRMP------TPKSTPEEMYRLMLQCWAADAESRPHFDE 1309
            ....|       :|.|..:.      .|...|...:.|...|...:.||...|.|
  Rat   549 CLPRT-------LDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPESSSSFQE 596

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.