DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and toca-2

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_499838.2 Gene:toca-2 / 176812 WormBaseID:WBGene00010663 Length:610 Species:Caenorhabditis elegans


Alignment Length:598 Identity:116/598 - (19%)
Similarity:223/598 - (37%) Gaps:137/598 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ALIVRQDAELRLMETMKRSIQMKAKCDKEYAISLTAVAQQ-GLKIDRADEMQGSL-ISKSWRSYM 77
            ||:......:...|.:.:..:.||..::||:..|.::|:: ..|.:..||:..|: .:.|:.|::
 Worm    16 ALLSYTQKGIDFFEKLGQFSKEKAAIEEEYSTKLRSLAKKYAKKSEEDDEILKSVSYTSSFNSFL 80

  Fly    78 DELDHQAKQFKFNAEQL-----EVVCDKLTHLSQDKRKARKAYQEEHAKIAARLNHLTDEVVRKK 137
            .:||..|.:.:.:||.:     ..|..|...:...::.|....:..:.|:..::|.:.      |
 Worm    81 QQLDQIATRHQTSAEHIRGGVVSYVASKTCQMRSSRKNAINDLKTINDKLEDQINEMC------K 139

  Fly   138 SEYQKHLEGYKALRTRFEENYIKAPSRSGRKLDDVRDKYQKACRKLHLTHNE--------YVLSI 194
            |. :.:|:.:|.....:::.|     ::.:.|:..|.:.:|| |.|....||        |...:
 Worm   140 SG-KCYLKSFKDAENSYQKFY-----KADKNLEISRLELEKA-RALANARNEACELAKQDYSALV 197

  Fly   195 TEAIEVEKDFRNVLLPGLLEHQQSVQESFILLWRNILQEAAQYGDLTADKYKEIQKRIDTVIGSI 259
            .:....:|.:...|||.:....::|.:..|...|.:||:...:.|..||..:|.:|.:...:|.|
 Worm   198 RKTNAEQKRYHVELLPVIFARLKAVDKECIADMRQVLQKIVSFDDSLADSTEECRKIMQREVGKI 262

  Fly   260 NPTEEYGEFTEKYKTSPTTPLLFQFDETLIQDIPGKLQSSTLTVDNLTVDWLRNRLQELEGAVRD 324
            :...:             ..|:.:..|..|:      |.:...:::|             |..::
 Worm   263 DAEGD-------------AQLVLKSVEATIE------QPAPFEIEDL-------------GDPKN 295

  Fly   325 CQEKQMKMIEHVNGGSPVANGSIISNGSNTSNGIQ-----------------SNKDSLCRQSKDL 372
            |..:       .|..:..:.|.::.:..:.:..|:                 ||.|.|....|..
 Worm   296 CDSR-------TNDSADGSGGKLLKSSPSKNRIIRNFLGILKEKEADEKPEASNNDQLMYTDKSK 353

  Fly   373 NA---LRCQEKQKQKLVDMIKCALNEVGCEELPSGCDDDLTLEQNFIENGYNNEQQRSNST-SSP 433
            .|   |.|   .:.|:.||      |...|:...|.:....|:|.:    |.|.|..:.|. :.|
 Worm   354 PAHVRLSC---LRSKIRDM------EKQLEQAIQGREGITRLQQAY----YTNPQHGNPSACTEP 405

  Fly   434 GLGIMNELMRRGGVLTLLR------------GRGRHFKRKSTPQPATPMTRSRQGRFNKLQPRSQ 486
            .:....::.:....:..|:            |:.|.|..:.||.    .|||..|       .|.
 Worm   406 LISYAKKIEKLKMDIHNLKEFYAMLEMSVEEGQERSFGGRDTPD----TTRSMSG-------SST 459

  Fly   487 SLGSLSVIRD---GNGPSPARYEPITNHRLRQA-ASVHYLGEEIATSSTNPPDLTRLRRTQCSML 547
            :..|...|.|   |...:.:..:..:.:.|||. .:...|.....||.::.|  |.|||.     
 Worm   460 NQSSSKTIEDVLSGEAGNSSSADDSSKNILRQLFTTPKRLISSPKTSKSSTP--TPLRRR----- 517

  Fly   548 CLGEDEEPVVLAS 560
              .|...|.:|.|
 Worm   518 --AEISSPKILRS 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341 49/242 (20%)
SH2_Fps_family 953..1039 CDD:198224
TyrKc 1063..1311 CDD:197581
PTKc_Fes_like 1067..1315 CDD:270637
toca-2NP_499838.2 F-BAR_CIP4-like 8..267 CDD:153337 55/263 (21%)
HR1_CIP4-like 356..431 CDD:212009 16/87 (18%)
SH3_CIP4-like 551..608 CDD:212844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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