DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and cam-1

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001021907.1 Gene:cam-1 / 174473 WormBaseID:WBGene00000289 Length:928 Species:Caenorhabditis elegans


Alignment Length:1016 Identity:216/1016 - (21%)
Similarity:368/1016 - (36%) Gaps:280/1016 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 DDDLTLEQNFIEN-GYNNEQQRSNSTSS-PGLGIMNELMRRGGVLTLLRGRGRHFKRKSTPQPAT 468
            ||||.:|....|. .|.|......||.. |.:.:.::|..    .|...|....||.::...|..
 Worm     7 DDDLVIEPADDEGLHYGNASMEGTSTGQRPYIRLTSQLRN----ATKSSGDEVRFKCEALGTPPL 67

  Fly   469 ---------PMTRSRQGRFNKLQPRSQ-SLGSLSVIRDGNGPSPARYEPITNHRLRQAASVHYLG 523
                     |:.::::.:....:..|: .:..|.|:..|      .|:.|.::   .||||:   
 Worm    68 KFIWLKNNGPVEKTKRVKIRDKENSSRLVITQLDVLDSG------YYQCIVSN---PAASVN--- 120

  Fly   524 EEIATSS----TNPPDLTRLRRTQCSMLCLGEDEEPVVLASPAPLTQLTAAVLTNTNNNHI---- 580
                |:|    .|.||..:|.:.:.|                            :.:..||    
 Worm   121 ----TTSVLRVNNVPDAVKLSQKKGS----------------------------HHSTKHIAFDE 153

  Fly   581 YADLEL--------DKKKDTSPSPE-CKGEQIQPKKEQIRIEINQTAPQNSIDAHLDRIDELNRV 636
            |.|.|:        ::..|....|: ..|....|          ....:..:|....|:.:..:.
 Worm   154 YEDYEMMDRGRLPDEEDADLYRVPDSAAGSNYAP----------VAVSERWLDGIKYRVGDCVQY 208

  Fly   637 LDDRLKRTLQPSDDVNAIESAEENHIQTRKLAKDPDSQTKRSSSSSSECRSSKDTSHSKKRSLSF 701
            ..:..::.|.....:...||.||.:        |.|    |:..::....:...|...|.|.|| 
 Worm   209 RGEACRQYLSNKFVMMTNESREEMY--------DID----RNLRAAMLFINGAPTISQKCRQLS- 260

  Fly   702 SQKSISNIFSNLKEFSKSPLVRMGKNH---ILNEEQDAKRTQPSQH---------------HHSS 748
            ...:..:::...:..|.:.:|.:.|:.   |.|:|..::....:||               ..||
 Worm   261 QAVACHHMYKVCESDSNNQIVSICKHDCDVIQNDECPSELALAAQHELVGDTPKALFPLCSRLSS 325

  Fly   749 GSDC-PTNSSSSSSNNNNNNKNTSSNSNH-----SASQSTIITSTITTTITTTTTTTPSKENSRL 807
            .|:| |..|::..|     :.....|..|     ..:..|....|:..| ::.....|..:::..
 Worm   326 TSNCIPVMSTALQS-----SPVAEVNRGHLTHWCYVNSGTQYEGTVAQT-SSGKQCAPWIDSTSR 384

  Fly   808 KFKV---PKIQKKSKAIRNTFRSKLLNFQLKRSKP-CKQCTKRRRIHPSKSVFDFAKEFEVEQPA 868
            .|.|   |::.......||...        |:|:| |                       ..:|.
 Worm   385 DFNVHRFPELMNSKNYCRNPGG--------KKSRPWC-----------------------YSKPM 418

  Fly   869 GSAADEQFCNCP--PAGQKPVKPSVQISGHKDHPFESSSGELDENSDRDIDNDEEEEDSA----- 926
            |   .|::|:.|  |:...|.....::.|       |:.|.:.|:.....|:.:.....|     
 Worm   419 G---QEEYCDVPQCPSDMYPHLNDKKVEG-------STKGGVSESVTALWDSLDPTMQVALVGGG 473

  Fly   927 ----------------------SDDVLSMKDHCYCVPSLAASISLS--------TNRPLYEEEWF 961
                                  |........||...||:..|.:.|        |:.|:...   
 Worm   474 VFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAYYRKLNGTSTPIMGR--- 535

  Fly   962 HGVLPREEVVRLLNNDGDFLVRETIRNEESQIVLSVCWNGHKHFIVQTTGEGNFRFEGPPFASIQ 1026
              |.|..|:..||.:                              .|..|.       ||:...|
 Worm   536 --VPPHVEMTSLLPS------------------------------AQHLGP-------PPYPMDQ 561

  Fly  1027 ELIM-HQYHSELPVTVKSGAILRRPVCRERWELSNDDVVLLERIGRGNFGDVYKAKLKS-----T 1085
            .|.. .::.|:.|:...|..:         :|::...:.:.|:||.|.||.|:.....|     .
 Worm   562 HLQQARRFPSQEPIDDNSYKV---------FEITPSQLSVREKIGEGQFGVVHSGIYTSGLFAPE 617

  Fly  1086 KLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSLLTYL 1150
            .:.||||.||....:.::.:..||.|.:..:||||::||||:|.....::.|.|.::.|.|...|
 Worm   618 PMAVAVKKCRHDATNAERAQLEQEIRAVATFDHPNVIKLIGVCYMDNSLLAVFEYMVHGDLHELL 682

  Fly  1151 R-------KNSNGLT--TRQQMGMCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKISDFGM 1206
            :       .:..|:|  ..:.:.:....|.||.||.|.:.:|||||.|||||....::||:|||:
 Worm   683 KVRVPPADHDMGGITEANAEFLYIATQIALGMEYLASMSFVHRDLATRNCLVGDTRTIKIADFGL 747

  Fly  1207 SREE--EEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGILMWEIFSKGDTPYSGMTNSRA 1269
            .|..  .:|........:||:|.:.||:..|:::...||||:|:.:|||:|.|..||.|.:|.:.
 Worm   748 MRTSYGSDYYKMLHRSWMPVRWMSKEAIEQGRFSEASDVWSFGVTLWEIWSFGRQPYEGASNQQV 812

  Fly  1270 RERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEI 1310
            .|.:...:.:..|.:.|..:|.||::||..:.|.||.|.||
 Worm   813 IELVANRHLLECPHNCPTNIYSLMVECWHENIERRPTFSEI 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 13/86 (15%)
TyrKc 1063..1311 CDD:197581 90/264 (34%)
PTKc_Fes_like 1067..1315 CDD:270637 90/260 (35%)
cam-1NP_001021907.1 I-set 39..127 CDD:254352 19/107 (18%)
Ig 55..122 CDD:143165 14/82 (17%)
CRD_TK_ROR_like 203..335 CDD:143568 26/144 (18%)
KR 352..431 CDD:214527 18/113 (16%)
STYKc 590..857 CDD:214568 90/264 (34%)
PTKc 594..858 CDD:270623 90/260 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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