DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and Frk

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001153016.1 Gene:Frk / 14302 MGIID:103265 Length:512 Species:Mus musculus


Alignment Length:390 Identity:137/390 - (35%)
Similarity:219/390 - (56%) Gaps:37/390 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   949 LSTNRPLYEEEWFHGVLPREEVVRLL----NNDGDFLVRETIRNEESQIVLSVCWNG-HKHFIVQ 1008
            ::.:|.|..|.||.|.:.|.:..:.|    |..|.||:||: .:::....|||...| .||:.::
Mouse   112 VAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRES-ESQKGDFSLSVLDEGVVKHYRIR 175

  Fly  1009 TTGEGNFRF-EGPPFASIQELIMHQYHSELPVTVKSGAILRRPVCR--------------ERWEL 1058
            ...||.|.. ....|:::.|.:.:...:...:.||    |.:|..:              ::||:
Mouse   176 RLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVK----LEKPCLKIQVPTPFDLSYKTADQWEI 236

  Fly  1059 SNDDVVLLERIGRGNFGDVYKAKLKSTKLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNIVK 1123
            ..:.:.||:|:|.|.||:|::....:| ..|||||.:....|  ...||:|.:|:|...||.:::
Mouse   237 DRNSIQLLKRLGSGQFGEVWEGLWNNT-TPVAVKTLKPGSMD--PNDFLREAQIMKSLRHPKLIQ 298

  Fly  1124 LIGICVQKQPIMIVMELVLGGSLLTYLRKNSNG--LTTRQQMGMCRDAAAGMRYLESKNCIHRDL 1186
            |..:|..:.||.|:.||:..|||..|| :|..|  :...||:.|....|:||.||||:|.|||||
Mouse   299 LYAVCTLEDPIYIITELMRHGSLQEYL-QNDGGSKIHLIQQVDMAAQVASGMAYLESQNYIHRDL 362

  Fly  1187 AARNCLVDLEHSV-KISDFGMSR----EEEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSY 1246
            ||||.||. ||:: |::|||::|    :.|:...|....::|||||||||:...|::...||||:
Mouse   363 AARNVLVG-EHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWTAPEAIRTNKFSIKSDVWSF 426

  Fly  1247 GILMWEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEIY 1311
            |||::||.:.|..||||||.::..:.:...||:|.|.:.|::.|.:||:||..:.:.||.|:.::
Mouse   427 GILLYEIITYGKMPYSGMTGAQVIQMLSQNYRLPQPSNCPQQFYSIMLECWNVEPKQRPTFETLH 491

  Fly  1312  1311
            Mouse   492  491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 25/91 (27%)
TyrKc 1063..1311 CDD:197581 106/254 (42%)
PTKc_Fes_like 1067..1315 CDD:270637 104/252 (41%)
FrkNP_001153016.1 SH3_Src_like 54..111 CDD:212779
SH2_Src_Frk 119..214 CDD:199831 26/99 (26%)
PTKc_Frk_like 232..501 CDD:270653 108/265 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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