DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and ltk

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_002933782.3 Gene:ltk / 100498306 XenbaseID:XB-GENE-22068681 Length:1314 Species:Xenopus tropicalis


Alignment Length:321 Identity:115/321 - (35%)
Similarity:163/321 - (50%) Gaps:44/321 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly  1006 IVQTTGEGNFRFEGPPFASIQELIMHQYHSELPVTVKSGAILRRPVCRERWELSNDDVVLLERIG 1070
            |:.|....|:.|.|.. ||:.||      .|:|                     ..::.||..:|
 Frog   885 IIMTDYNPNYCFAGKG-ASLSEL------KEVP---------------------RKNITLLRALG 921

  Fly  1071 RGNFGDVYKAKL-----KSTKLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNIVKLIGICVQ 1130
            .|.||:||:..:     ....|.||:||......::.:..||.|..|:.::.|.|||:.||:.:|
 Frog   922 HGAFGEVYEGMVVGISGDPNPLQVAIKTLPEICSEQDEMDFLMEALIISKFSHQNIVRCIGVSLQ 986

  Fly  1131 KQPIMIVMELVLGGSLLTYLRKN------SNGLTTRQQMGMCRDAAAGMRYLESKNCIHRDLAAR 1189
            ..|..|::||:.||.:.::||:|      .:.|:....:.|.||.|.|.:|||..:.||||:|||
 Frog   987 TLPRFILLELMSGGDMKSFLRQNRPWINQPSTLSMLDLLNMARDIACGCKYLEENHFIHRDIAAR 1051

  Fly  1190 NCLVDLEHS---VKISDFGMSRE--EEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGIL 1249
            |||:....:   .||.||||:|:  ...|....|...:||||..|||...|.:||..|.||:|:|
 Frog  1052 NCLLTYSGTGRVAKIGDFGMARDIYRASYYRKGGRAMLPVKWMPPEAFLEGVFTSKTDTWSFGVL 1116

  Fly  1250 MWEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEI 1310
            :|||||.|..||...||....|.:.:|.||..||:.|..:||:|.|||....|.||:|..|
 Frog  1117 LWEIFSLGYMPYPCKTNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHTPEHRPNFSTI 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 10/32 (31%)
TyrKc 1063..1311 CDD:197581 104/264 (39%)
PTKc_Fes_like 1067..1315 CDD:270637 102/260 (39%)
ltkXP_002933782.3 LDLa 230..263 CDD:197566
MAM 277..431 CDD:99706
PTKc_ALK_LTK 907..1183 CDD:270632 106/292 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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