DRSC/TRiP Functional Genomics Resources

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Protein Alignment FER and abl1

DIOPT Version :10

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_002936228.2 Gene:abl1 / 100490771 XenbaseID:XB-GENE-6054675 Length:1128 Species:Xenopus tropicalis


Alignment Length:538 Identity:166/538 - (30%)
Similarity:259/538 - (48%) Gaps:96/538 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   841 KQCTKRRRIHPSKSVFDFAKEFEV-------EQPAGSAADEQFCNCPPAGQKPVKPSVQISGHKD 898
            |:| :|::.....|.....|..|:       :...|.::... |....|.|:|....::..|   
 Frog     9 KKC-RRQQKGAGASCMQHMKMLEICLKLVGCKSKKGLSSSSS-CYLEEALQRPTVSDIEPQG--- 68

  Fly   899 HPFESSSGELDE----NSDRDIDNDEEEED-----------SASDDVLSMK----------DHC- 937
                     |.|    ||..::.:...|.|           ::.|:.||:.          :|. 
 Frog    69 ---------LSEAARWNSKENLLSGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNG 124

  Fly   938 -YC----------VPSLAASISLSTNRPLYEEEWFHGVLPREEVVRLLNN--DGDFLVRETIRNE 989
             :|          |||   :.....|.| .:..|:||.:.|.....||::  :|.|||||: .:.
 Frog   125 EWCEAQTKNGQGWVPS---NYITPVNSP-EKHSWYHGPVSRNAAEYLLSSGINGSFLVRES-ESS 184

  Fly   990 ESQIVLSVCWNGH-KHFIVQTTGEGNFRFEGPP-FASIQELIMHQYHSELPVTVKSGAI--LRRP 1050
            ..|..:|:.:.|. .|:.:.|..:|........ |.::.||:.|  ||    ||..|.|  |..|
 Frog   185 PGQRSISLRYEGRVYHYRINTASDGKLYVSSDSRFNTLAELVHH--HS----TVSDGLITTLHYP 243

  Fly  1051 VCR-------------ERWELSNDDVVLLERIGRGNFGDVYKAKLKSTKLDVAVKTCRM-TLPDE 1101
            ..:             ::||:...|:.:..::|.|.:|:||:...|...|.|||||.:. |:..|
 Frog   244 APKRNKPTIYGVSPNYDKWEIERTDITMKHKLGGGQYGEVYEGVWKKYNLTVAVKTLKEDTMEVE 308

  Fly  1102 QKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSLLTYLRK-NSNGLTTRQQMGM 1165
            :   ||:|..::|:..|||:|:|:|:|.::.|..|:.|.:..|:||.|||. |...:|....:.|
 Frog   309 E---FLKEAAVMKEVKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRDCNRQEVTAVVLLHM 370

  Fly  1166 CRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKISDFGMSR--EEEEYIVSDGMKQIPVKWTA 1228
            ....::.|.|||.||.||||||||||||...|.||::|||:||  ..:.|....|.| .|:||||
 Frog   371 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK-FPIKWTA 434

  Fly  1229 PEALNFGKYTSLCDVWSYGILMWEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLM 1293
            ||:|.:.|::...|||::|:|:|||.:.|.:||.|:..|:..|.::..|||..|:..||::|.||
 Frog   435 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELM 499

  Fly  1294 LQCWAADAESRPHFDEIY 1311
            .:||......||.|.||:
 Frog   500 RECWQWSPLDRPSFAEIH 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 25/89 (28%)
PTKc_Fes_like 1067..1315 CDD:270637 105/249 (42%)
abl1XP_002936228.2 SH3_Abl 92..145 CDD:212784 8/55 (15%)
SH2_ABL 150..243 CDD:198189 29/99 (29%)
PTKc_Abl 262..524 CDD:270645 108/260 (42%)
F_actin_bind 1003..1128 CDD:471692
Blue background indicates that the domain is not in the aligned region.

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