DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and met

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001007125.1 Gene:met / 100150664 ZFINID:ZDB-GENE-041014-1 Length:1382 Species:Danio rerio


Alignment Length:583 Identity:149/583 - (25%)
Similarity:255/583 - (43%) Gaps:133/583 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   797 TTTPSKENSRLKFKVPKIQKKSKAIRNTFRSKLLNFQLKRSKPCK---------QCTKRRRIHPS 852
            |.||..:.:.|:.|||.:.:  :|::|....::.|      :.|:         :||....:..:
Zfish   846 TVTPRGKKNILEIKVPPVNQ--EAVKNGEVLRVSN------RTCESVTLVGNTLECTVPMELQTA 902

  Fly   853 KSVFDFAKEFEVEQPAGSAADEQFCNCPPAGQKPVKPSVQISGHKDHPFESSSGELDENSDRDID 917
                  |||.|||....:::             .:...|.::..:|:....:.|           
Zfish   903 ------AKELEVEWKQATSS-------------VILGRVILAQDQDYRILITGG----------- 937

  Fly   918 NDEEEEDSASDDVLSMKDHCYCVP---SLAASISLSTNRPLYEEE------WFHG---------- 963
                                .||.   .|..::.:...|..:.::      |:.|          
Zfish   938 --------------------VCVSILLLLLIAVFVWIKRKKHIDDLAKTMVWYDGRAHIPHLDML 982

  Fly   964 -----VLPREEVVRLLNNDGDFLVRETIRNEESQIVLSVCWNGHKHFIVQT---------TGEGN 1014
                 |.|.:|:|.  :...|:  |.|:. |:..:.||...:...|....:         ..||:
Zfish   983 ANARSVSPTDEMVS--HESVDY--RTTLL-EDQNLPLSQTESCRPHLYAHSHVDLSPMLGPMEGD 1042

  Fly  1015 FRFEGPPFASIQELIMHQYHSELPVTVKSGAILRRPVCRERWELSNDDVVL--LERIGRGNFGDV 1077
              ...|...|...:.:...|.||.. |:...|.|            :|::|  .|.||||:||.|
Zfish  1043 --LASPLLPSTAPIDLGSLHPELLKXVQHVVIAR------------EDLLLHVNEIIGRGHFGCV 1093

  Fly  1078 YKAKL---KSTKLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNIVKLIGICVQKQ--PIMIV 1137
            :...|   ...|...|:|:.......|:..:||:||.|:|.:.|||::.|:|||:..:  | ::|
Zfish  1094 FHGTLLEPDGQKQHCAIKSLNRITDIEEVSQFLKEGIIVKDFSHPNVLSLLGICLPSEGSP-LVV 1157

  Fly  1138 MELVLGGSLLTYLRKNSNGLTTRQQMGMCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKIS 1202
            :..:..|.|..::|..|:..|.:..||.....|.||.||.||..:|||||||||::|..::||::
Zfish  1158 LPYMKHGDLRNFIRDESHNPTVKDLMGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESYTVKVA 1222

  Fly  1203 DFGMSR---EEEEYIVSD--GMKQIPVKWTAPEALNFGKYTSLCDVWSYGILMWEIFSKGDTPYS 1262
            |.|::|   ::|.|.|.:  |:| :||||.|.|:|...|:|:..||||:|:|:||:.::|..|||
Zfish  1223 DVGLARDVYDKEYYSVHNKHGVK-LPVKWMALESLQTHKFTTKSDVWSFGVLLWELMTRGAPPYS 1286

  Fly  1263 GMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEIYNVVDALILRLDNSH 1325
            .:.:......:..|.|:..|:..|:.:|.:|::||....|.||.|.|:.:.:.|:.......|
Zfish  1287 DVNSFDITVFLLQGRRLLQPEFCPDALYNVMIECWHPKPERRPTFLELVSRISAIFSSFSGEH 1349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 21/115 (18%)
TyrKc 1063..1311 CDD:197581 97/259 (37%)
PTKc_Fes_like 1067..1315 CDD:270637 96/257 (37%)
metNP_001007125.1 Sema_MET_like 43..511 CDD:200509
PSI 514..559 CDD:214655
IPT 562..653 CDD:301692
IPT_plexin_repeat2 654..736 CDD:238584
IPT 740..823 CDD:301692
Pkinase_Tyr 1079..1338 CDD:285015 97/260 (37%)
PTKc_Met_Ron 1083..1344 CDD:270649 97/262 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100013
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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