DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and mst1rb

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_009304468.1 Gene:mst1rb / 100134855 ZFINID:ZDB-GENE-071218-3 Length:1374 Species:Danio rerio


Alignment Length:534 Identity:142/534 - (26%)
Similarity:227/534 - (42%) Gaps:144/534 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   919 DEEEEDSAS---DDVLSMKDHCYCVPSLAASISLSTN------RPLYEEEWFH------------ 962
            ||.||...|   |.||.:..|.:........|...|.      .|.::|...|            
Zfish   818 DETEEGELSFDMDGVLGLWKHDFSYHPYGKPIPFETEGHILRLYPGFDEVSLHHQKLNLVSSCMS 882

  Fly   963 ------------GVLPREEVVRLLNNDGDFLVRETIRNEESQIVLSVCWNGHKH----------- 1004
                        .||..|...|:.||       .||.:|...:.::|  ||:.|           
Zfish   883 ITMTVGDVDCGGKVLDNEITCRIPNN-------LTIPSEGLPVKVTV--NGYTHNVGTVILVSNH 938

  Fly  1005 --------------------FIV-----------QTTGEGNF------RFEGPPFASIQELIMHQ 1032
                                |||           ||....::      |......:|:.:     
Zfish   939 YMVGIVLGILAALVTGAVLAFIVLKNLRKQKKASQTENRLSYFSHSRSRNNSVDLSSLVD----- 998

  Fly  1033 YHSELP---VTVKSGAI-----------------LRRPVCRERWELSNDDVVLLER--------- 1068
            |..:||   :|..:||:                 |..|   |:..:::....|||.         
Zfish   999 YRRDLPLTSITAPTGAVAFPGLAYTGTLDTTLTPLMPP---EKISITSFRPELLEEVKDVLIPAS 1060

  Fly  1069 ---------IGRGNFGDVYKAKL---KSTKLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNI 1121
                     ||:|:||.||...|   .:.::..|||:.......|:..:||:||.::|.:.|.|:
Zfish  1061 TLKVHHHQIIGKGHFGTVYHGYLTDHNNREIHCAVKSLNRITDVEEVEQFLKEGILMKGFHHSNV 1125

  Fly  1122 VKLIGICVQKQPI-MIVMELVLGGSLLTYLRKNSNGLTTRQQMGMCRDAAAGMRYLESKNCIHRD 1185
            :.|:||.:.::.: ::|:..:..|.|..::|..:...|.:..:|.....|.||.||..|..:|||
Zfish  1126 LSLLGILLPEEGLPLVVLPYMKHGDLRHFIRCENRNPTVKDLIGFGLQVAKGMEYLAQKKFVHRD 1190

  Fly  1186 LAARNCLVDLEHSVKISDFGMSR---EEEEYIVSDGMK-QIPVKWTAPEALNFGKYTSLCDVWSY 1246
            ||||||::|..::||::||||:|   |:|.|.|.|..| ::||||.|.|:|...|:|:..||||:
Zfish  1191 LAARNCMLDESYTVKVADFGMARDVLEKEYYSVQDHRKAKLPVKWMAIESLQTQKFTTKSDVWSF 1255

  Fly  1247 GILMWEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEIY 1311
            |:||||:.::|.:||..:........:..|.|:|.|:..|:.::.:|||||..|.|.||.|..:.
Zfish  1256 GVLMWEMLTRGASPYPEVDPYDVTHYLLKGRRLPQPQYCPDPLFAIMLQCWDPDPEKRPSFSTLV 1320

  Fly  1312 NVVDALILRLDNSH 1325
            :.|.:::..|:..|
Zfish  1321 SAVMSILSSLEGEH 1334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 26/160 (16%)
TyrKc 1063..1311 CDD:197581 96/273 (35%)
PTKc_Fes_like 1067..1315 CDD:270637 94/273 (34%)
mst1rbXP_009304468.1 Sema_MET_like 41..506 CDD:200509
PSI 511..553 CDD:214655
IPT 553..658 CDD:214657
IPT_plexin_repeat2 660..748 CDD:238584
IPT_PCSR 751..844 CDD:238337 9/25 (36%)
PTKc_Met_Ron 1068..1329 CDD:270649 94/260 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100013
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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