DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8861 and Ly6k

DIOPT Version :9

Sequence 1:NP_001163567.1 Gene:CG8861 / 41109 FlyBaseID:FBgn0037676 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001381953.1 Gene:Ly6k / 100363492 RGDID:2322953 Length:179 Species:Rattus norvegicus


Alignment Length:135 Identity:30/135 - (22%)
Similarity:47/135 - (34%) Gaps:43/135 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LAILVAIVLCSGSLGFAD---GLKCHMCGQYNEGVGSITPCTNYTTDIAHLYLKECTKKSEKFCV 111
            ||:|:|:.|........|   .:.||:|    |...::. |:|         .|.| ...:|||:
  Rat    26 LALLIAVGLPLVKTNVDDEEEKITCHVC----ESESNLN-CSN---------PKAC-DSGKKFCL 75

  Fly   112 KYVSEL-----STVRDCATEC------------------VEKEIWETQTYCCTEDGCNSGTQLAY 153
            ..|:.:     ...:.|...|                  |||.:......||..|.||.  :...
  Rat    76 LAVTRIFERFFYVSKQCTQLCPTPPLFFAETPSEPKGFLVEKPLPFLFVKCCKWDLCNE--KFPV 138

  Fly   154 SVILL 158
            |:.:|
  Rat   139 SITML 143



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1586315at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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