DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1e and Cdyl

DIOPT Version :10

Sequence 1:NP_649878.1 Gene:HP1e / 41108 FlyBaseID:FBgn0037675 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_017456089.1 Gene:Cdyl / 361237 RGDID:1549745 Length:617 Species:Rattus norvegicus


Alignment Length:75 Identity:27/75 - (36%)
Similarity:39/75 - (52%) Gaps:8/75 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TVSNFSENSTDFEETEEYIVERILD-RRHYMGQLQYLVKWLDYSDEDNTWESAADL-DCHSLIDS 72
            |||:..:.|...::.|.. ||.|:| |::..|:.:|||:|..|..||:|||....| :|...|..
  Rat    39 TVSDPDQVSPAVQDAETQ-VESIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHD 102

  Fly    73 I-----ESQK 77
            .     |.||
  Rat   103 FNRRHNERQK 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1eNP_649878.1 CD_CSD 27..71 CDD:349274 18/45 (40%)
CSD_HP1e_insect 111..163 CDD:349337
CdylXP_017456089.1 CD_CDY 56..105 CDD:349284 19/49 (39%)
crotonase-like 363..559 CDD:119339
Blue background indicates that the domain is not in the aligned region.

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