DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1e and HP1Lcsd

DIOPT Version :10

Sequence 1:NP_649878.1 Gene:HP1e / 41108 FlyBaseID:FBgn0037675 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001246478.1 Gene:HP1Lcsd / 12798145 FlyBaseID:FBgn0263084 Length:83 Species:Drosophila melanogaster


Alignment Length:63 Identity:24/63 - (38%)
Similarity:33/63 - (52%) Gaps:11/63 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 SPFNHGFTAQEIL----KGAKNNGEISFLIRFWHLDQP--QVVPSGIAYVEIPQMVLKFYENH 162
            :||..|...::|:    ...||.   .|||:|  .|.|  :|||...|...|||||::||.:|
  Fly     4 TPFVRGRMVEKIVYVFTTANKNT---MFLIKF--KDSPVVEVVPGIEANRRIPQMVIEFYMDH 61

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1eNP_649878.1 CD_CSD 27..71 CDD:349274
CSD_HP1e_insect 111..163 CDD:349337 22/58 (38%)
HP1LcsdNP_001246478.1 CSD 10..62 CDD:349275 21/57 (37%)
Blue background indicates that the domain is not in the aligned region.

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