DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sage and Atoh8

DIOPT Version :10

Sequence 1:NP_524287.1 Gene:sage / 41105 FlyBaseID:FBgn0037672 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_001102711.1 Gene:Atoh8 / 500200 RGDID:1561512 Length:322 Species:Rattus norvegicus


Alignment Length:256 Identity:71/256 - (27%)
Similarity:94/256 - (36%) Gaps:65/256 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSTAGVPG-----DPPPVLVPVSATTGGPYLSGGSEGEAESSEQPVLLELGAPQSSSCPAVSLNY 66
            |:||...|     .|.|:..||.|:.......||....|..     ...:.||:.|.  |....:
  Rat    57 SATAATNGLRDRTQPFPIATPVPASVAPAVPPGGGTDTARE-----FRGIRAPEVSD--ARKRGF 114

  Fly    67 TLTADGAGLLAYAPTHP-----HSYSPSVMGGYEKEAHNMGLLPPTYSVIPQPVSMWHAGQVATG 126
            .|...|.||    ||.|     .|.:|   |..|.:......|.|...:...|.....:..:|  
  Rat   115 ALGTVGPGL----PTPPPPPASQSLAP---GDPEVQPLREQALRPRILLCAPPARPTPSAPLA-- 170

  Fly   127 SPVGLECNKPSELVPP--PMYMSYS---------------------GGSIANSTEVDIAKEHNPA 168
             |..:....|....||  |...|||                     |.:.|.|||:         
  Rat   171 -PPAVPQESPVRPAPPTRPGESSYSSISHVIYNNHPDSSASPRKRPGEATAASTEI--------- 225

  Fly   169 WREKALQMEKDYRRTACDRERTRMRDMNRAFDLLRSKLPISKPNGKKYSKIESLRIAINYI 229
               ||||..:  |..|..|||||:..::.||:.||.::|... .|:|.||:..||||.|||
  Rat   226 ---KALQQTR--RLLANARERTRVHTISAAFEALRKQVPCYS-YGQKLSKLAILRIACNYI 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sageNP_524287.1 bHLH_TS 181..236 CDD:381396 23/49 (47%)
Atoh8NP_001102711.1 PRK12323 <50..>185 CDD:481241 33/144 (23%)
bHLH_TS_ATOH8 225..292 CDD:381427 27/71 (38%)

Return to query results.
Submit another query.