DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sage and Neurod4

DIOPT Version :9

Sequence 1:NP_524287.1 Gene:sage / 41105 FlyBaseID:FBgn0037672 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_001099412.2 Gene:Neurod4 / 288821 RGDID:1310434 Length:330 Species:Rattus norvegicus


Alignment Length:110 Identity:43/110 - (39%)
Similarity:54/110 - (49%) Gaps:14/110 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 DIAKEHNPAWRE--KA-LQMEKDYRRTACDRERTRMRDMNRAFDLLRSKLP-ISKPNGKKYSKIE 220
            |..|...|..::  || |:..:..|..|..||||||..:|.|.|.||..:| .||.  :|.||||
  Rat    65 DKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT--QKLSKIE 127

  Fly   221 SLRIAINYINHLQAMLRESSVGQNGNG----CCAWSGGSSSPYDN 261
            :||:|.|||..|..:| |:.....|.|    .|.   |.|.|..|
  Rat   128 TLRLARNYIWALSEVL-ETGQTLEGKGFVEMLCK---GLSQPTSN 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sageNP_524287.1 HLH 181..233 CDD:278439 27/52 (52%)
Neurod4NP_001099412.2 bHLH_TS_NeuroD4_ATOH3 59..145 CDD:381564 35/82 (43%)
Neuro_bHLH 146..263 CDD:403655 7/26 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.