DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sage and cnd-1

DIOPT Version :9

Sequence 1:NP_524287.1 Gene:sage / 41105 FlyBaseID:FBgn0037672 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_001379767.1 Gene:cnd-1 / 183212 WormBaseID:WBGene00000561 Length:192 Species:Caenorhabditis elegans


Alignment Length:64 Identity:30/64 - (46%)
Similarity:41/64 - (64%) Gaps:1/64 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 LQMEKDYRRTACDRERTRMRDMNRAFDLLRSKLPISKPNGKKYSKIESLRIAINYINHLQAMLR 237
            :...|..|..|..|||.||..:|.|.|:||..:||:..: :|.||||:||:|.|||:.||.||:
 Worm    14 ISKRKVRRVKANGRERARMHGLNNALDMLREYIPITTQH-QKLSKIETLRLARNYIDALQRMLQ 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sageNP_524287.1 HLH 181..233 CDD:278439 25/51 (49%)
cnd-1NP_001379767.1 bHLH_TS_NeuroD 21..75 CDD:381433 27/54 (50%)
Neuro_bHLH 78..>129 CDD:403655
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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