DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sage and neurog3

DIOPT Version :9

Sequence 1:NP_524287.1 Gene:sage / 41105 FlyBaseID:FBgn0037672 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_571890.1 Gene:neurog3 / 114411 ZFINID:ZDB-GENE-010608-4 Length:208 Species:Danio rerio


Alignment Length:146 Identity:46/146 - (31%)
Similarity:65/146 - (44%) Gaps:33/146 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 IANSTEVDIA-KEHNPAWRE-----------KALQMEKDYRRT-ACDRERTRMRDMNRAFDLLRS 204
            |..:.|.::| ||.:..:||           .:...::..||. |.||.|.||.::|.|.|.|||
Zfish    39 IKYNREAELASKEWSFTFREDKTSNGKLKKLMSTSRQRGNRRVKANDRGRHRMHNLNSALDNLRS 103

  Fly   205 KLPISKPNGKKYSKIESLRIAINYINHLQAMLR-------ESSVGQN------GNGCCAWSGGSS 256
            .|| :.|:..|.:|||:||.|.|||..|...||       .|:..|:      .|.|.....|:|
Zfish   104 VLP-TFPDDAKLTKIETLRFARNYIWALSETLRIADHVRQRSNHAQDQENLAVPNACLDVRYGAS 167

  Fly   257 SP------YDNGNDHW 266
            |.      ..|.:.:|
Zfish   168 SACASKWHSTNSSSNW 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sageNP_524287.1 HLH 181..233 CDD:278439 27/52 (52%)
neurog3NP_571890.1 HLH 84..135 CDD:197674 25/51 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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