DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pum and JSN1

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_012624.1 Gene:JSN1 / 853553 SGDID:S000003851 Length:1091 Species:Saccharomyces cerevisiae


Alignment Length:1389 Identity:246/1389 - (17%)
Similarity:424/1389 - (30%) Gaps:533/1389 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 QHPGQQQQQQQQQQQ-----QQHPGQYNANLLNHAAALGHMSSYAQSGGSMYDHHGGAMHPGMNG 317
            ::.|:...|.|||.|     :...|:::..|.|...::           |...||......|.||
Yeast    33 ENNGESNSQLQQQPQKLGSYRSRAGKFSNTLSNLLPSI-----------SAKLHHSKKNSHGKNG 86

  Fly   318 GMPKQQPLGPPGAGGPQDYVYMGGQTTVPMGAAMMPPQNQYMNSSAVAAANRNAAITTSTAKKLW 382
                                            |.....|   |||....|::....:.|.:|.:.
Yeast    87 --------------------------------AEFSSSN---NSSQSTVASKTPRASPSRSKMME 116

  Fly   383 EKSDGKGVSSSTPGGPLHPLQIPGIGDPSSVWKDHTWSTQGENILVPPPSRAYAHGGASDTSNSG 447
            ...|  ||:...||. |.|        |..:.|...:.....|.|:|.|.      |:||:.|..
Yeast   117 SSID--GVTMDRPGS-LTP--------PQDMEKLVHFPDSSNNFLIPAPR------GSSDSFNLP 164

  Fly   448 NAGILSPRDSTCAKVVEYVFSGSPTNKDSS-----------------LSGLEPHLRNLKFDDNDK 495
            :. |...|::|.:..:..:.|.:|..:.||                 |..|:|...|  ...|..
Yeast   165 HQ-ISRTRNNTMSSQITSISSIAPKPRTSSGIWSSNASANDPMQQHLLQQLQPTTSN--NTTNSN 226

  Fly   496 SRDDKEKANSPFD----TNGLKKDDQVTNSNGVVNGIDDDKGFNRTPGSRQPSPAEESQPRPPNL 556
            :.:|.....:.||    |:|.:..|...|:|.:.           .|.|...:..:.||....: 
Yeast   227 TLNDYSTKTAYFDNMVSTSGSQMADNKMNTNNLA-----------IPNSVWSNTRQRSQSNASS- 279

  Fly   557 LFPPLPFNHMLMDHGQGMGGGLGGVVGSGNGVGGGSGGGGAGGAYAAHQQMAAQMS-----QLQP 616
            ::...|....                             .|..:.::|..:..|.|     ::.|
Yeast   280 IYTDAPLYEQ-----------------------------PARASISSHYTIPTQESPLIADEIDP 315

  Fly   617 PMMNGVGGGMPMAAQSPMLNHQAAGPNHMESPGNLLQQQNFDVQQLF--RSQNPGLAAVATNAAA 679
            ..:|.|    .|....|.:|..:          |||......:..:|  :.|.|.|     |.|.
Yeast   316 QSINWV----TMDPTVPSINQIS----------NLLPTNTISISNVFPLQHQQPQL-----NNAI 361

  Fly   680 AAAAAAAATSAASAAAAVGAPPVPNGSLQQSQQQQQQQQQQQQQQQMHMAAASQQFLAAQQQAQN 744
            ...:.:.||..:.....:.|..:.|                     ::||...   .::.:.|..
Yeast   362 NLTSTSLATLCSKYGEVISARTLRN---------------------LNMALVE---FSSVESAVK 402

  Fly   745 AAYAAQQATSYVINPGQEAAPYMGMIAA-AQMPYYGVAPWGMYPGN-LIPQQGTQPRRPLTPSQQ 807
            |..:.|         |:|    :.||.| :::.:..:.|....|.. |:..||.    ||     
Yeast   403 ALDSLQ---------GKE----VSMIGAPSKISFAKILPMHQQPPQFLLNSQGL----PL----- 445

  Fly   808 GAENQPYQVIPAFLDHTGSLLMGGPRTGTPMRLVSPAPVLVPPGATRAGPPPPQGPQLYQPQPQT 872
            |.||...|                           |.|:|                         
Yeast   446 GLENNNLQ---------------------------PQPLL------------------------- 458

  Fly   873 AQQNLYS-----QQNGSSVGGLALNTSSLTGRRDSFDRSTSAFSPSTMDYTSSGVAAAANAVNST 932
             |:.|::     ||.| :|.....|..|...:..:....::.||.....|.::      |:::  
Yeast   459 -QEQLFNGAVTFQQQG-NVSIPVFNQQSQQSQHQNHSSGSAGFSNVLHGYNNN------NSMH-- 513

  Fly   933 VAQAAAAAAAAAAARGKWPGAMSGAASGAYGALGAGNASAS-------PLGAPITPPPSAQSCLL 990
                                             |..|.||:       ||     |||:.     
Yeast   514 ---------------------------------GNNNNSANEKEQCPFPL-----PPPNV----- 535

  Fly   991 GSRAPGAESRQRQQQQQQLAAVGLPATAAAAQAAVAAAANNMFGSNS------SIFSNPLAIPGT 1049
                     .:::...:::.                    .:|.:||      |:....|...||
Yeast   536 ---------NEKEDLLREII--------------------ELFEANSDEYQINSLIKKSLNHKGT 571

  Fly  1050 AAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPGRSRLLEDFRNQRYPNLQLRDLAN 1114
            :...                             ..|..|:|        ...:.:...:||:|..
Yeast   572 SDTQ-----------------------------NFGPLPEP--------LSGREFDPPKLRELRK 599

  Fly  1115 HIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNT 1179
            .|       ..:.|...::|:...|        :|.....|.:|..||.::||.||..:...|:.
Yeast   600 SI-------DSNAFSDLEIEQLAIA--------MLDELPELSSDYLGNTIVQKLFEHSSDIIKDI 649

  Fly  1180 LGMQVKGHVLQLALQMYGCRVIQKALE-SISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIEC 1243
            :..:...::..:.:...|....||.:. :.:|.|..::...:..:....:.||.||:|:|    |
Yeast   650 MLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQ----C 710

  Fly  1244 VDPVAL---QFIINAFKGQVYSLSTHPYGCRVIQRILE-H--CTAEQTTPILDELHEHTEQLIQD 1302
            |.....   |||..:.....:.:..:.||.|.::..|| |  .|.||:..:...:..:.|.|..:
Yeast   711 VLKFGFPWNQFIFESIIANFWVIVQNRYGARAVRACLEAHDIVTPEQSIVLSAMIVTYAEYLSTN 775

  Fly  1303 QYGNYVIQHVLEHGKQEDK-SILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCT 1366
            ..|..::...|:.....:: |||...:..:::.|..|:.||..:.|.:.:  ||:          
Yeast   776 SNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLTILKVLNY--RGD---------- 828

  Fly  1367 FNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLM------------------------------ 1401
              |||..:::...:.|....   |.|.|.:|.||:                              
Yeast   829 --DNARKIILDSLFGNVNAH---DSSPPKELTKLLCETNYGPTFVHKVLAMPLLEDDLRAHIIKQ 888

  Fly  1402 --------TKIRPHMAALRKY-------TYGK-------HINAKLEKYYMKITNPITVGTGAGGV 1444
                    |:|:|....|.:.       |:.|       |.|:.:...:   ..|.|.|....|:
Yeast   889 VRKVLTDSTQIQPSRRLLEEVGLASPSSTHNKTKQQQQQHHNSSISHMF---ATPDTSGQHMRGL 950

  Fly  1445 PAASSAAAVSSGATSASVTACTSGSSTTTTSTTNSLASPTICSVQENG-SAMVVEPSSPDASESS 1508
                |.::|.||           ||..||.:||.:           || ||..:.|..|..:.|:
Yeast   951 ----SVSSVKSG-----------GSKHTTMNTTTT-----------NGSSASTLSPGQPLNANSN 989

  Fly  1509 SSV----------VSG-AVNSSLG 1521
            ||:          ||| :.|:|.|
Yeast   990 SSMGYFSYPGVFPVSGFSGNASNG 1013

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 74/377 (20%)
JSN1NP_012624.1 COG5099 58..920 CDD:227430 207/1240 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.