DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pum and PUF3

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_013088.1 Gene:PUF3 / 850647 SGDID:S000003936 Length:879 Species:Saccharomyces cerevisiae


Alignment Length:1266 Identity:298/1266 - (23%)
Similarity:442/1266 - (34%) Gaps:516/1266 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 ANLLNHAAALGHMSSYAQSGGSMYDHHGGAMHPGMNGGMPKQQPLGPPGAGGPQDYVYMGG---- 341
            |::::..:||.|.::                    |||......:...||.|.|.   :||    
Yeast    14 ASIVSSLSALSHSNN--------------------NGGQAAAAGIVNGGAAGSQQ---IGGFRRS 55

  Fly   342 --------------------------QTTVPMGAAMMPP----------------QNQYMNSSAV 364
                                      :|.:.:|.|  ||                |.:..:::::
Yeast    56 SFTTANEVDSEILLLHGSSESSPIFKKTALSVGTA--PPFSTNSKKFFGNGGNYYQYRSTDTASL 118

  Fly   365 AAANRNAAITTSTAKKLWEKSDGK--------GVSSSTPGGPLHPLQIPGIGDPSSVWKDHTWST 421
            ::|:.|...|..||..|     ||        |..|::..||:                      
Yeast   119 SSASYNNYHTHHTAANL-----GKNNKVNHLLGQYSASIAGPV---------------------- 156

  Fly   422 QGENILVPPPSRAYAHGGASDTSNSGNAGILSPRDSTCAKVVEYVFSGSPTNKDSSLSGLEPHLR 486
                         |.:|  :|.:|||..|...       |..:.:..|:               |
Yeast   157 -------------YYNG--NDNNNSGGEGFFE-------KFGKSLIDGT---------------R 184

  Fly   487 NLKFDDNDKSRDDKEKANSPFDTNGLKKDDQVTNSNGVVNGIDDDKGFNR--------------T 537
            .|:..|    |.|.....|.|.:..: .:..:...|.....::.||.||:              :
Yeast   185 ELESQD----RPDAVNTQSQFISKSV-SNASLDTQNTFEQNVESDKNFNKLNRNTTNSGSLYHSS 244

  Fly   538 PGSRQPSPAEESQPRPP-----NLLFPPL--PFNHMLMDHGQGMGGGLGGVVGSGNGVGGGSGGG 595
            ..|...:..|......|     |:...|:  |.|:             ...||:.|........|
Yeast   245 SNSGSSASLESENAHYPKRNIWNVANTPVFRPSNN-------------PAAVGATNVALPNQQDG 296

  Fly   596 GAGGAYAAHQQMAAQMSQLQPPMMNGVGGGMPMAAQSPMLNHQAAGPNHMESPGNLLQQQNFDVQ 660
            .|...:              ||.|||.         .|...||  ||::...|..|:...:..:.
Yeast   297 PANNNF--------------PPYMNGF---------PPNQFHQ--GPHYQNFPNYLIGSPSNFIS 336

  Fly   661 QLFRSQNPGLAAVATNAAAAAAAAAAATSAASAAA--------------AVGAPPVPNGSLQQSQ 711
            |:...|.|.......:.......|...:|.:|.::              .:..||.|..:.||.|
Yeast   337 QMISVQIPANEDTEDSNGKKKKKANRPSSVSSPSSPPNNSPFPFAYPNPMMFMPPPPLSAPQQQQ 401

  Fly   712 QQQQQQQQQQQQQQMHMAAASQQFLAAQQQAQNAAYAAQQATSYVINPGQEAAPYMGMIAAAQMP 776
            ||||||||:.|||              |||.:|                    ||:         
Yeast   402 QQQQQQQQEDQQQ--------------QQQQEN--------------------PYI--------- 423

  Fly   777 YYGVAPWGMYPGNLIPQQGTQPRRPLTPSQQGAENQPYQVIPAFLDHTGSLLMGGPRTGTPMRLV 841
            ||...       |.||.:  .|:...|..::..:|.|                            
Yeast   424 YYPTP-------NPIPVK--MPKDEKTFKKRNNKNHP---------------------------- 451

  Fly   842 SPAPVLVPPGATRAGPPPPQ-GPQLYQ--PQPQTAQQNLYSQQNGSSVGGLALNTSSLTGRRDSF 903
                      |..:.....| .|.|..  |...|:::|..|:.|.|:......::.|        
Yeast   452 ----------ANNSNNANKQANPYLENSIPTKNTSKKNASSKSNESTANNHKSHSHS-------- 498

  Fly   904 DRSTSAFSPSTMDYTSSGVAAAANAVNSTVAQAAAAAAAAAAARGKWPGAMSGAASGAYGALGAG 968
                                                                             
Yeast   499 ----------------------------------------------------------------- 498

  Fly   969 NASASPLGAPITPPPSAQSCLLGSRAPGAESRQRQQQQQQLAAVGLPATAAAAQAAVAAAANNMF 1033
                                     .|.::|.|:|||...                         
Yeast   499 -------------------------HPHSQSLQQQQQTYH------------------------- 513

  Fly  1034 GSNSSIFSNPLAIPGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPGRSRLLED 1098
                                                                      ||.|||.
Yeast   514 ----------------------------------------------------------RSPLLEQ 520

  Fly  1099 FRN-----QRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTD 1158
            .||     ....|:.|:|:..|.:||.:|||||||||::|..:.|:||:::|:||...|..|..|
Yeast   521 LRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSND 585

  Fly  1159 VFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGH 1223
            ||||||||||||||:..|||||..|.||::.||:||||.|||||||||.|...|:.|:|.||...
Yeast   586 VFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDS 650

  Fly  1224 VLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPI 1288
            ||:.:||||||||:||.||.:....|.||:::..|.:|.||||.||||||||:||..::|....|
Yeast   651 VLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESI 715

  Fly  1289 LDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSI------LINSVRGKVLVLSQHKFASNVVEK 1347
            |:||.:....||||||||||||:||:..:..:|.:      :|.:|...|:..|:||||||||||
Yeast   716 LNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEK 780

  Fly  1348 CVTHATRGERTGLIDEVC---------TFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTK 1403
            .:.:.::.::..:|.::.         ..:|:.:.:|:|||:||||:||:::|||....|.::..
Yeast   781 SILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIA 845

  Fly  1404 IRPHMAALRK-YTYGKHINAKLEKYYMKITN 1433
            ||.::..|.| .:.|....|.:||....:.|
Yeast   846 IRAYLDKLNKSNSLGNRHLASVEKLAALVEN 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 157/333 (47%)
PUF3NP_013088.1 COG5099 54..876 CDD:227430 284/1201 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342119
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 341 1.000 Inparanoid score I408
Isobase 1 0.950 - 0 Normalized mean entropy S1682
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000719
OrthoInspector 1 1.000 - - oto99012
orthoMCL 1 0.900 - - OOG6_100436
Panther 1 1.100 - - LDO PTHR12537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1032
SonicParanoid 1 1.000 - - X849
TreeFam 1 0.960 - -
1211.730

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