DRSC/TRiP Functional Genomics Resources

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Protein Alignment pum and PUM10

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_174813.1 Gene:PUM10 / 840480 AraportID:AT1G35750 Length:528 Species:Arabidopsis thaliana


Alignment Length:354 Identity:99/354 - (27%)
Similarity:180/354 - (50%) Gaps:20/354 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly  1077 VAAAAGGVGGAPQPGRSRLLEDFRNQRYP--NLQLRDLANHIVEFSQDQHGSRFIQQKLERATAA 1139
            :.||..| .||..|...::     |...|  .:.:.::...:...::||.|.|.:|:.:|..|..
plant   183 ILAAMEG-SGASYPDEPKI-----NGGLPLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVL 241

  Fly  1140 EKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKG---HVLQLALQMYGCRVI 1201
            :.:::|.||:.....|..|..|||::||.......||:..:...:..   .::::.|...|.|||
plant   242 DSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVI 306

  Fly  1202 QKALESISPEQQQEIVHE-LDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLST 1265
            ||.::::..:||..:|.. |:...|..|.|.||.||:|.|:|.:.|...:|::.|.......|:|
plant   307 QKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLAT 371

  Fly  1266 HPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSI-LINSVR 1329
            |.|||.|:|..|.:....|...::.|:...:.:|.||.:||||:|.:::   |:..|: |:...|
plant   372 HQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLID---QQVSSVNLLLPFR 433

  Fly  1330 GKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEP 1394
            ...:.|:..||:|:|:|||:..... .|..::.|:.::.:  ...:::|.|||||:|..:.|::.
plant   434 THCIELATQKFSSHVIEKCLRKYPE-SRAEIVRELLSYPN--FEQLLQDPYANYVIQTALSVTKG 495

  Fly  1395 TQLKKLMTKIRPHMAALRKYTYGKHINAK 1423
            ....:|:.|:: ....|:...|.|.|.:|
plant   496 AVRARLVEKVK-RFGKLQSNPYCKKIFSK 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 91/323 (28%)
PUM10NP_174813.1 Pumilio 209..523 CDD:153420 90/320 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000719
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

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