DRSC/TRiP Functional Genomics Resources

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Protein Alignment pum and PUM11

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_192624.2 Gene:PUM11 / 826455 AraportID:AT4G08840 Length:556 Species:Arabidopsis thaliana


Alignment Length:332 Identity:93/332 - (28%)
Similarity:177/332 - (53%) Gaps:29/332 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly  1111 DLANHIVEF------SQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFF 1169
            |||:.:..:      ::||.|.|.:|:.::.....:..::|.|::.....|.||.||||:|||..
plant   235 DLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLI 299

  Fly  1170 EFGTPEQKNTLGMQV---KGHVLQLALQMYGCRVIQKALESISPEQQQEIVHE-LDGHVLKCVKD 1230
            |....||:..:.:::   .|.::::::..||.||:||.:|:::.::|..:|.. |....|...::
plant   300 EVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRE 364

  Fly  1231 QNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEH 1295
            .|||||:..|::...|...:||:.|.......::|..:||.|:||.:.:...||...::||:..:
plant   365 LNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRN 429

  Fly  1296 TEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGL 1360
            :..|.||.:|||::|:::|  |:.....::..:||..:.|:..||.|:|||||:.:... .|:.:
plant   430 SLLLAQDPFGNYLVQYIIE--KKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYPE-SRSQI 491

  Fly  1361 IDE-VCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKL 1424
            ::| |...|   ...:::|.|||||:|..:..::......|:.|:|            ::.|.|:
plant   492 VNELVSVLN---FGYLLQDPYANYVIQCALSKTKGFVRASLVEKVR------------RYENLKM 541

  Fly  1425 EKYYMKI 1431
            ..|..:|
plant   542 TPYCKRI 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 90/323 (28%)
PUM11NP_192624.2 Pumilio 237..551 CDD:153420 91/330 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000719
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

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