DRSC/TRiP Functional Genomics Resources

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Protein Alignment pum and pum1

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_001264048.1 Gene:pum1 / 394176 ZFINID:ZDB-GENE-030131-2074 Length:1152 Species:Danio rerio


Alignment Length:1299 Identity:491/1299 - (37%)
Similarity:609/1299 - (46%) Gaps:367/1299 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 AMHPGMNGGMPKQQPLGPPGAGGPQ-----DYVYM---GGQTTV-------PMG--------AAM 351
            |.|....|..| |.|....|||..|     ||.:.   |.|...       |.|        ...
Zfish    41 AGHTPQPGPSP-QAPAPTQGAGRSQDDAMVDYFFQRQHGDQPGYNNCKHRWPTGDNIHADNQVRS 104

  Fly   352 MPPQNQYMNSSAVAAANRNAAITTSTAKKLWEKSDGKGVSSSTPGGPLHPLQIPGIGDPSSV--- 413
            |...|.  :..|:|...|.......|.||.||..|.                  |...|..:   
Zfish   105 MDELNH--DFQALALEGRAMGEQLLTGKKFWETDDS------------------GKDGPKGIFLD 149

  Fly   414 -WKDHTWSTQGENILVP-----PPSRAYAHGGASDTSNSGNAG-ILSPRDST---CAKVVEYVFS 468
             |:|..|.....::..|     .|.:.: ||       .|.|| :||||..:   ...:||||.|
Zfish   150 QWRDSAWGASDHSVSQPIMVQRRPGQGF-HG-------VGEAGSVLSPRSESGGLGVSMVEYVLS 206

  Fly   469 GSPTNK-DSSLSGLEPHLRNLKFDDNDKSRDDKEKANSPFDTNGLK--KDDQVTNSNGV--VNGI 528
            .||..| ||.|.......|:.:.||.:|..:.|.|.....:...||  :.|.:.|.||:  .||:
Zfish   207 SSPAEKMDSCLRKGAYGPRDSEADDPEKRVEQKPKTTFDPERKELKETEPDVLDNPNGLPNQNGL 271

  Fly   529 D-DDKGFNRTPGSRQPSPAEESQPRPPNLLFPPLPFNHMLMDHGQGMGGGLGGVVGSGNGVGGGS 592
            | |.|.|:||||:..|:..|..                                      :||..
Zfish   272 DVDVKDFSRTPGNCPPTGQEVE--------------------------------------LGGPE 298

  Fly   593 GGGGAGGAYAAH-QQMAAQMSQLQPPMMNGV----------GGGMPMAAQSPMLNHQAAGPNHME 646
            ..||||...|.. ..:..|...|.|  |..|          ||.:|:.:.:     ...|.....
Zfish   299 MVGGAGPKPAEEFSNVETQNVTLDP--MESVSMETLQFEYPGGQLPLDSTA-----ATVGLFDYN 356

  Fly   647 SPGNLLQQQNFDVQQLFRSQNPGLAAVATNAAAAAAAAAAATSAASAAAAVGAPPVPNGSLQQSQ 711
            ||           ||||  |.|...||                                      
Zfish   357 SP-----------QQLF--QRPNALAV-------------------------------------- 370

  Fly   712 QQQQQQQQQQQQQQMHMAAASQQFLAAQQQAQNAAYAAQQATSYVIN---PGQEAAPYMGMIAAA 773
                ||....||||..:|||.|..:       ..|.||.....|:|:   ||.:  ||...:|||
Zfish   371 ----QQLTAAQQQQYALAAAQQPHI-------GLAPAAFVPNPYIISAAPPGTD--PYAAGLAAA 422

  Fly   774 Q------MP--YYGVAPWGMYPGNLIPQQGTQP-------------------------RRPLTPS 805
            .      ||  ||||.|||:||.||..||...|                         :||||||
Zfish   423 ATLGPAVMPPQYYGVTPWGVYPANLFQQQAATPSNSANQQSAAQNQQNQQQVMRAGGNQRPLTPS 487

  Fly   806 --QQGAENQP-----------------------YQVI--PAFLDHTGSLLMGGPRTGTPMRLVSP 843
              |||.:.:.                       |.|:  .|:.|.||:|::.....|.|:||::|
Zfish   488 QGQQGQQTEQLVAAAAVNSALAFGQGLAAGVPGYPVLAPAAYYDQTGALVVNTGARGGPVRLMAP 552

  Fly   844 APVLVPPGATRAGPPPPQGPQL--YQPQPQTAQQNLYSQQNGSSVGGLALNTSSL--TGRRDSFD 904
            |.|::.|.|..|......|...  .......|.:.|.|||.....|..||..||.  :|...|..
Zfish   553 ASVIISPSAAVAAAAASAGGANAGLGGGASGAFRALSSQQAPGQQGSGALGGSSFYGSGSPSSSS 617

  Fly   905 RSTSAFSPSTMDYTSSGVAAAANAVNSTVAQAAAA------AAAAAAARGKWPGAMSGA------ 957
            :|:|.||..:....::.:...||..:|..|...||      |.|.:::.|....:::|:      
Zfish   618 QSSSLFSQGSAQPGNTSLGFNANPTSSLGATLGAALGGFGTAVANSSSSGSRRDSLTGSSDLYKR 682

  Fly   958 -ASG----AYGALGAG---NASASPLGAP---------ITPPP------SAQSCLLG-------- 991
             ||.    .:||...|   ::|..|:|.|         :||||      |:.|..||        
Zfish   683 TASSLTPIGHGAFYNGLSFSSSPGPVGMPLPNQGPSHSLTPPPSLSTHGSSSSLNLGGLTNGSGR 747

  Fly   992 --SRAPGAESRQRQQQQQQLAAVGLPATAAAAQAAVAAAANNMFGSNSSIFSNPLAIPGTAAVAA 1054
              |.|||||::.|.                      |...:::|..:|.:|.:            
Zfish   748 FISAAPGAEAKYRS----------------------ATTGSSLFSPSSQLFPS------------ 778

  Fly  1055 AAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPGRSRLLEDFRNQRYPNLQLRDLANHIVEF 1119
                                   :....|:......|||||||||||.||||||||::|.|::||
Zfish   779 -----------------------SRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHVMEF 820

  Fly  1120 SQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQV 1184
            |||||||||||.|||||:.||:|:||:|||.|||.||.|||||||||||||||:.:||..|..::
Zfish   821 SQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERI 885

  Fly  1185 KGHVLQLALQMYGCRVIQKALESISPEQQ--QEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPV 1247
            :||||.||||||||||||||||.|..:||  .|:|.||||||||||||||||||||||||||.|.
Zfish   886 RGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPH 950

  Fly  1248 ALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHV 1312
            ||||||:||||||::||||||||||||||||||..|||..||:|:|:|||||:||||||||||||
Zfish   951 ALQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQLVQDQYGNYVIQHV 1015

  Fly  1313 LEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFND---NALHV 1374
            ||||:.||||.:::.:||.||.|||||||||||||||||:.|.||..||||||:..|   :||:.
Zfish  1016 LEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYT 1080

  Fly  1375 MMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEKYYMKITNPITVG 1438
            |||||||||||||||||:||||.|.:|.|||||:|.||||||||||.|||||||||  |.:.:|
Zfish  1081 MMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYYMK--NGVDLG 1142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 243/322 (75%)
pum1NP_001264048.1 Pumilio 807..1130 CDD:153420 243/322 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582072
Domainoid 1 1.000 133 1.000 Domainoid score I5025
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 617 1.000 Inparanoid score I864
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000719
OrthoInspector 1 1.000 - - otm26492
orthoMCL 1 0.900 - - OOG6_100436
Panther 1 1.100 - - O PTHR12537
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X849
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.980

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