DRSC/TRiP Functional Genomics Resources

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Protein Alignment pum and SPAC4G8.03c

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_593062.1 Gene:SPAC4G8.03c / 2543684 PomBaseID:SPAC4G8.03c Length:780 Species:Schizosaccharomyces pombe


Alignment Length:411 Identity:108/411 - (26%)
Similarity:200/411 - (48%) Gaps:48/411 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly  1022 QAAVAAAANNMFGSNSSIFSNPLAIPGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGG 1086
            :|.:....|:.|||:|:  ||...:|.:|.:.                                |
pombe   404 KATLGKTVNSFFGSHST--SNYSKVPLSAKLT--------------------------------G 434

  Fly  1087 APQPGRSRLLEDFRNQRYPNLQLRDLA---NHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEI 1148
            ......|.||::...::..:.|:..|.   .|:....:||:|.|::|:.|:........:.|.||
pombe   435 EKSDDLSNLLKNKGKKKSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEI 499

  Fly  1149 LAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQ 1213
            ..:...||.|.||||:.||.|.:.:.|||.::...:...::.:...:||.|.:|..::.::..:|
pombe   500 RQSVVQLMIDPFGNYMCQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQ 564

  Fly  1214 -----QEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVI 1273
                 :.|:..|.  .|.|  |.||.||:||||....|..|:.:..:.:..:.:|:|:.:||.::
pombe   565 ISLLLKIIIPSLT--TLAC--DNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCIL 625

  Fly  1274 QRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQH 1338
            ||.|:....:....:::.:.:....|:|:.||||::|||||...|.....:|....|.:..||..
pombe   626 QRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQ 690

  Fly  1339 KFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTK 1403
            ||:||.:|:|:..|:...|..::.|..:|.:  :..::.|.|||||:|:.::|::.:|...::..
pombe   691 KFSSNAIEQCIRTASPSTREQMLQEFLSFPN--IEQLLDDCYANYVMQRFLNVADESQKFLILRS 753

  Fly  1404 IRPHMAALRKYTYGKHINAKL 1424
            |...:..::...:|:||.|||
pombe   754 ISHVIPKIQNTRHGRHILAKL 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 92/325 (28%)
SPAC4G8.03cNP_593062.1 COG5099 2..780 CDD:227430 108/411 (26%)
Pumilio 465..774 CDD:153420 90/314 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000719
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100436
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.670

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