DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pum and puf3

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_593141.2 Gene:puf3 / 2542300 PomBaseID:SPAC1687.22c Length:732 Species:Schizosaccharomyces pombe


Alignment Length:676 Identity:235/676 - (34%)
Similarity:338/676 - (50%) Gaps:135/676 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   836 TPMRLVSPAPVLVPPGATRAGPPPPQGPQLYQPQP------------------------------ 870
            :|..|||..   ..|.|...|.|.|.|.|..:..|                              
pombe    97 SPDSLVSTP---TAPSANHHGNPFPNGKQSIKAMPSLVNLQEDSVISKFPNSLEVPFRKRSESTS 158

  Fly   871 ----------QTAQQNLYSQQNG--------------SSVGGLALNTSSLTGRRDS---FDRSTS 908
                      :..:..||.|.|.              :.:||.:..|.|.:..|.|   |.|.|.
pombe   159 SSLSGLHSDLRPLKTELYGQLNSECGARFPQTLKSPLTPIGGDSARTVSASTARTSDKFFPRHTR 223

  Fly   909 AFSPSTMDYTS--SGVAAAANAVNSTVAQAAAAAAAAAAARGKWPGAMSGA--ASGAYGALGA-- 967
            |.|...:..||  |..|:.::..:.|....::.::.:.:.:..|.|:...:  |..:||...|  
pombe   224 AHSDFWIPATSKPSRHASHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAFA 288

  Fly   968 --------------GNASASPLGAPITPPPSAQSCLLGSRAPGAESRQRQQQQQQLAAVGLPATA 1018
                          |:||..|..:||                |...|   |....::|.|:|.|.
pombe   289 NGNSPTLKNDSSFFGSASVRPTVSPI----------------GTSFR---QSLPDISAFGIPKTE 334

  Fly  1019 AAAQAAVAAAANNMFGSNSSIFSNPLAIPGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGG 1083
            ......||                    |||..:      :....|...|||.|..:.:     .
pombe   335 TNPSEVVA--------------------PGTIPI------SVLPTSNFSAATPANPSLI-----N 368

  Fly  1084 VGGAPQPGRSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEI 1148
            ..|.....:||:|..|...:..:.:|.|:..::|.||.||||||||||||..||..|::.||.||
pombe   369 QNGQEFLQQSRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEI 433

  Fly  1149 LA-AAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQ 1212
            .: :...||.|:|||||:||:||||..:||..|..|:||||..|:||||||||:|||:|.||||.
pombe   434 ASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEH 498

  Fly  1213 QQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRIL 1277
            |.:::.|||||||.||.|||||||:||.|||:|...||||:.|.:.|::.||.||||||||||.:
pombe   499 QVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAI 563

  Fly  1278 EHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFAS 1342
            |||.:|:.. |::||..|..:|.||||||||:||:|..|.:.||..:.:.:...:|.||.|||||
pombe   564 EHCHSERKL-IIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFAS 627

  Fly  1343 NVVEKCVTHATRGERTGLIDEVCT---FNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKI 1404
            ||||:|:::.:..:|..:::::.:   .|.:.|.:||||:|||||:||::|.|...:...|::.|
pombe   628 NVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYI 692

  Fly  1405 RPHMAALRKYTYGKHINAKLEKYYMK 1430
            .||::.|:|:|||||:...:|::..|
pombe   693 YPHISVLKKFTYGKHLIMSVERFRQK 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 167/321 (52%)
puf3NP_593141.2 Pumilio 391..712 CDD:153420 167/321 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000719
OrthoInspector 1 1.000 - - oto100500
orthoMCL 1 0.900 - - OOG6_100436
Panther 1 1.100 - - LDO PTHR12537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1032
SonicParanoid 1 1.000 - - X849
TreeFam 1 0.960 - -
109.800

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