DRSC/TRiP Functional Genomics Resources

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Protein Alignment pum and PUM2

DIOPT Version :10

Sequence 1:NP_524285.2 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_001339846.1 Gene:PUM2 / 23369 HGNCID:14958 Length:1066 Species:Homo sapiens


Alignment Length:234 Identity:45/234 - (19%)
Similarity:79/234 - (33%) Gaps:89/234 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 KFLR-------------WF-----NHIGGTSTGSMITLGLVKYGNIDHVIRQYFRMKDDIFIGSR 525
            ||||             |:     |...|:|     .:|.:|...|..|.:|         ..|:
Human    24 KFLRRYFILDTREDSFVWYMDNPQNLPSGSS-----RVGAIKLTYISKVPKQ---------SDSQ 74

  Fly   526 PYSGEGLENALLNEFGRDTLQQLGEKNGIRISIPVARVDI--SPPLLYMFRSYNIRD--PSFDQA 586
            |.|              |:|.:.|:....::|.   |.||  ..|::...:...:.:  .|.|:.
Human    75 PAS--------------DSLSRQGDCGKKQVSY---RTDIVGGVPIITPTQKEEVNECGESLDRN 122

  Fly   587 GMKPVWAAAKVVRASSAAPSFF--PPVDGKFMDGGLIANNPAVDILTDCQRLEYERNERNVSKIM 649
            .:|         |:.|..|.|.  ||.|...:..|......||  :.:.:|..::.:|..:    
Human   123 NLK---------RSQSHLPYFAPKPPSDSAVIKAGYCVKQGAV--MKNWKRRYFQLDENTI---- 172

  Fly   650 VSIGTGSMQKKIENVDLMKPTTMGGIVNTFNQILHLKDV 688
                 |..:.::|...|              :::.||:|
Human   173 -----GYFKSELEKEPL--------------RVIPLKEV 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_524285.2 Pumilio 1106..1424 CDD:153420
PUM2NP_001339846.1 Interaction with SNAPIN. /evidence=ECO:0000269|PubMed:19168546 1..260 45/234 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 106..204 21/121 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 494..553
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 620..650
Pumilio 721..1044 CDD:153420
Pumilio 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 726..761
Adenine-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 741..745
Pumilio 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 762..797
Uracil-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 777..781
Pumilio 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 798..835
Adenine-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 813..817
Pumilio 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 836..871
Non-specific-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 851..855
Pumilio 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 872..907
Adenine-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 887..891
Pumilio 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 908..943
Uracil-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 923..927
Pumilio 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 944..979
Guanine-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 959..963
Pumilio 8. /evidence=ECO:0000255|PROSITE-ProRule:PRU00317, ECO:0000269|PubMed:21397187 983..1022
Uracil-nucleotide binding in RNA target. /evidence=ECO:0000250|UniProtKB:Q14671 1002..1006
Blue background indicates that the domain is not in the aligned region.

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