Protein Alignment pum and puf-3

DIOPT Version :9

• Sequence 1: NP_001262403.1
• Gene: pum / 41094
• FlyBaseID: FBgn0003165
• Length: 1533
• Species: Drosophila melanogaster
• Sequence 2: NP_502606.1
• Gene: puf-3 / 178320
• WormBaseID: WBGene00004239
• Length: 502
• Species: Caenorhabditis elegans
• Alignment Length: 530
• Identity: 134/530 - (25%)
• Similarity: 224/530 - (42%)
• Gaps: 109/530 - (20%)

  Fly   969 NASASPLGAPITPPPSAQ-------SCLLGSRAPGAESRQRQQQQQQLAAVGLPATAAAAQAAVA 1026
            |..:|.||.....||:|.       .|...:.:....:..|:..    :::|..:::...|:|.|
 Worm     4 NTGSSNLGRYYESPPTATEARGTFGGCFNANSSTNIWTPNRKVD----SSMGFRSSSPTPQSAWA 64

  Fly  1027 AAANNMFGSNSSIF--SNPLAIPG---TAAVAAAAAAAAAANSRQVAATAAAAAAVAA--AAGGV 1084
            ..... ||...|.:  |.|:..|.   ..||........|:.|:.:.:|..:......  |..|.
 Worm    65 PNRQG-FGGQFSKWRTSTPMTTPARYPQQAVRLIDLENNASFSKSLNSTTRSHKCTLPIWAGDGE 128

  Fly  1085 GGAPQPGRSRLLEDFRNQRYPNLQLRDLANH-IVEFSQDQHGSRFIQ------------QKLERA 1136
            |....   |..|:|.            |||. :|||:.|::|.||:|            |||.|.
 Worm   129 GNVSD---SVTLQDV------------LANDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRK 178

  Fly  1137 TAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVI 1201
            ...::        |...||.:::|||:.:|:..|....|::..|...:...:..|.|....||||
 Worm   179 LVEDR--------AIFLSLCSNMFGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVI 235

  Fly  1202 QKALESISPEQQQEIVHEL-DGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAF--KGQVYSL 1263
            |.|::.:.......:..|| |.|:::...|||||||:||.::.:...:..|:::.|  ...:..:
 Worm   236 QLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHV 300

  Fly  1264 STHPYGCRVIQRILEHCTAEQTTPILDELHEH---------------TEQLIQDQYGNYVIQHVL 1313
            ....|||||||..:|..:.:|..    :.::|               ..||..:::.|||:|||:
 Worm   301 CQDKYGCRVIQSTVETLSTDQYA----QCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVI 361

  Fly  1314 EHGKQED-----KSILINS-VRGKVLVLSQHKFASNVVE---KCVTHATRGER-----TGLIDEV 1364
            :.|   |     :.|:|.. :...:|.:||.|:||:|||   :|..:....|.     .|.|...
 Worm   362 KCG---DALAVYRDIIIEQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPHP 423

  Fly  1365 CTFNDNALHVMMKDQYANYVVQKMIDVSEPTQ--------------LKKLMTKIRPHMAALRKYT 1415
            .| |.:||.:::..||.|||||:||......|              |:|:..::..:...|.:::
 Worm   424 DT-NRDALDILLFHQYGNYVVQQMIQTCVLGQNARDQKQSEMYGMWLEKIHGRVMRNAHRLERFS 487

  Fly  1416 YGKHINAKLE 1425
            .||.|...|:
 Worm   488 SGKKIIEALQ 497

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pum	NP_001262403.1	Pumilio	1106..1424	CDD:153420	103/376 (27%)
puf-3	NP_502606.1	Pumilio	134..496	CDD:153420	106/389 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5099
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S1682
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR12537
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.860