Protein Alignment pum and puf-3

DIOPT Version :10

• Sequence 1: NP_524285.2
• Gene: pum / 41094
• FlyBaseID: FBgn0003165
• Length: 1533
• Species: Drosophila melanogaster
• Sequence 2: NP_502606.1
• Gene: puf-3 / 178320
• WormBaseID: WBGene00004239
• Length: 502
• Species: Caenorhabditis elegans
• Alignment Length: 531
• Identity: 133/531 - (25%)
• Similarity: 225/531 - (42%)
• Gaps: 111/531 - (20%)

  Fly   969 NASASPLGAPITPPPSAQ-------SCLLGSRAPGAESRQRQQQQQQLAAVGLPATAAAAQAAVA 1026
            |..:|.||.....||:|.       .|...:.:....:..|:..    :::|..:::...|:|.|
 Worm     4 NTGSSNLGRYYESPPTATEARGTFGGCFNANSSTNIWTPNRKVD----SSMGFRSSSPTPQSAWA 64

  Fly  1027 AAANNMFGSNSSIF--SNPLAIPG---TAAVAAAAAAAAAANSRQVAATAAAAAAVAA--AAGGV 1084
            ..... ||...|.:  |.|:..|.   ..||........|:.|:.:.:|..:......  |..|.
 Worm    65 PNRQG-FGGQFSKWRTSTPMTTPARYPQQAVRLIDLENNASFSKSLNSTTRSHKCTLPIWAGDGE 128

  Fly  1085 GGAPQPGRSRLLEDFRNQRYPNLQLRD-LANH-IVEFSQDQHGSRFIQ------------QKLER 1135
            |....                ::.|:| |||. :|||:.|::|.||:|            |||.|
 Worm   129 GNVSD----------------SVTLQDVLANDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFR 177

  Fly  1136 ATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRV 1200
            ....::        |...||.:::|||:.:|:..|....|::..|...:...:..|.|....|||
 Worm   178 KLVEDR--------AIFLSLCSNMFGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRV 234

  Fly  1201 IQKALESISPEQQQEIVHEL-DGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAF--KGQVYS 1262
            ||.|::.:.......:..|| |.|:::...|||||||:||.::.:...:..|:::.|  ...:..
 Worm   235 IQLAIQKLDVHLATRLSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIH 299

  Fly  1263 LSTHPYGCRVIQRILEHCTAEQTTPILDELHEH---------------TEQLIQDQYGNYVIQHV 1312
            :....|||||||..:|..:.:|..    :.::|               ..||..:::.|||:|||
 Worm   300 VCQDKYGCRVIQSTVETLSTDQYA----QCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHV 360

  Fly  1313 LEHGKQED-----KSILINS-VRGKVLVLSQHKFASNVVE---KCVTHATRGER-----TGLIDE 1363
            ::.|   |     :.|:|.. :...:|.:||.|:||:|||   :|..:....|.     .|.|..
 Worm   361 IKCG---DALAVYRDIIIEQCLLQNLLSMSQEKYASHVVEVAFECAPYRLVAEMMNEIFEGYIPH 422

  Fly  1364 VCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQ--------------LKKLMTKIRPHMAALRKY 1414
            ..| |.:||.:::..||.|||||:||......|              |:|:..::..:...|.::
 Worm   423 PDT-NRDALDILLFHQYGNYVVQQMIQTCVLGQNARDQKQSEMYGMWLEKIHGRVMRNAHRLERF 486

  Fly  1415 TYGKHINAKLE 1425
            :.||.|...|:
 Worm   487 SSGKKIIEALQ 497

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pum	NP_524285.2	Pumilio	1106..1424	CDD:153420	105/377 (28%)
puf-3	NP_502606.1	Pumilio	134..496	CDD:153420	105/377 (28%)