DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pum and puf-11

DIOPT Version :9

Sequence 1:NP_001262403.1 Gene:pum / 41094 FlyBaseID:FBgn0003165 Length:1533 Species:Drosophila melanogaster
Sequence 2:NP_741425.1 Gene:puf-11 / 177406 WormBaseID:WBGene00022257 Length:505 Species:Caenorhabditis elegans


Alignment Length:528 Identity:126/528 - (23%)
Similarity:215/528 - (40%) Gaps:123/528 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   992 SRAPGAESRQRQQQQQQLAAVGLPATAAAAQAAVAAAANNMFGSNSSIFSNPLAIPGTAAVAAAA 1056
            |::.|:.:..|..:.        |.|..|...:........|.||||....|           ..
 Worm     2 SQSTGSSNLGRYHES--------PPTTEARNVSGKNTFGGCFNSNSSNIWTP-----------NR 47

  Fly  1057 AAAAAANSRQVAATAAAAAAVAAAAGGVGG--------------APQPGRS-RLLEDFRNQRYPN 1106
            ...::...::|::|...|:  .....|.||              |..|.:: ||::...|...||
 Worm    48 NVDSSMGFQRVSSTPKNAS--TPYRQGFGGQFSKWRTSTPMTTPARHPQQALRLIDLENNASSPN 110

  Fly  1107 ---------------------------LQLRD-LANH-IVEFSQDQHGSRFIQ------------ 1130
                                       :.|.| |||. :|||:.|::|.||:|            
 Worm   111 TLNSSTRSYKCTLPIWAGDGEGNVSDSVTLPDVLANDALVEFATDKNGCRFLQEHYPTESDNDIH 175

  Fly  1131 QKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQM 1195
            |||.|....::        |...||..::|||:.:|:..|....|::..|...:...:..|.|..
 Worm   176 QKLFRKLVEDR--------AIFLSLCCNMFGNFFVQRVLECSNTEEQEILTEHLASDLYNLCLDK 232

  Fly  1196 YGCRVIQKALESISPEQQQEIVHEL-DGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAF--K 1257
            ..|||||.|::.:.......:..|| |.::::...|||||||:||.::.:...|..|::..|  .
 Worm   233 SACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADD 297

  Fly  1258 GQVYSLSTHPYGCRVIQRILE--------HCTAEQTT---PILDELHEHTEQLIQDQYGNYVIQH 1311
            ..:..:....|||||||..:|        .|..::..   .::..:..:..||..:::.|||:||
 Worm   298 DNLIHVCQDKYGCRVIQSTVETLSSDTYAECYQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQH 362

  Fly  1312 VLEHGKQED--KSILINS-VRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVC-------T 1366
            |::.|....  :.::|.. :...:|.:||.|:||:|||.....|.......:::|:.       .
 Worm   363 VIKCGDAMAVYRDVIIEQCLLQNLLSMSQEKYASHVVEVAFGCAPCRLAAEMMNEIFEGYIPHPD 427

  Fly  1367 FNDNALHVMMKDQYANYVVQKMIDVSEPTQ--------------LKKLMTKIRPHMAALRKYTYG 1417
            .|.:||.:::..||.||||||||.:....|              |:|:..::..:...|.:::.|
 Worm   428 TNRDALDILLFHQYGNYVVQKMIQICVLGQNARDQKQAEMYGMWLEKIRERVMRNANRLERFSSG 492

  Fly  1418 KHINAKLE 1425
            |.|...|:
 Worm   493 KKIIEALQ 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pumNP_001262403.1 Pumilio 1106..1424 CDD:153420 101/396 (26%)
puf-11NP_741425.1 Pumilio 137..499 CDD:153420 100/369 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5099
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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