DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm2 and kdm7a

DIOPT Version :9

Sequence 1:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:NP_001072664.1 Gene:kdm7a / 780121 XenbaseID:XB-GENE-5900920 Length:922 Species:Xenopus tropicalis


Alignment Length:1041 Identity:255/1041 - (24%)
Similarity:386/1041 - (37%) Gaps:354/1041 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 QLRERK--QRKLYLEEWSLGDEDG-----EGTRGFSVAEKLESSKFAQA-GMVREMRGCDLTVAF 99
            ||::|:  .|..|.|     .:||     .|||.|  .::|::..|..| .::.:|.|..||..:
 Frog    62 QLKKRRNWHRHDYTE-----PDDGTKPVQAGTRTF--IQQLQARSFPSADDLLLKMNGSQLTQRY 119

  Fly   100 LQQHGFNIPLLFRDKAGLGLRMPDPQEFTVNDVRLCVGSRRLLDVMDVNTQKNLQMTMKEWQQYY 164
            |::.|||:|::......||||:| |..|:|.||...||..:::||:||..|.:.:|.:|.:.:|:
 Frog   120 LEKQGFNLPIMVPRLDDLGLRLP-PPTFSVMDVERYVGGEKIIDVIDVARQADSKMKLKNFVKYF 183

  Fly   165 DSPQKDRLLNVISLEFSHTRLDRFVQSPEIVRQIDWVDVVWPKQLKDAQREGTNLLGGMMYPKVQ 229
            .:|.:.::|||||||||.|::...|:.|:|.:::.||:..||..            .....|.||
 Frog   184 MNPDRPKVLNVISLEFSDTKMADLVKVPDISKKLSWVENYWPDD------------SFFTKPFVQ 236

  Fly   230 KYCLMSVKNCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTDRNLQLYEKWVLSGKQADIFFGDTV 294
            |||||.|::.||||||||||||||||:|.|.|||:||.|:|.||.|||.|..|..|::.||||.|
 Frog   237 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKVFYLIKPSDENLALYESWSSSVTQSEEFFGDKV 301

  Fly   295 EKCARVYLTAGNTFFIPTGWIHAVYTPTQSLVFGGNFLHSFGIVKQLKTASVEDSTKVPQKFRYP 359
            :||.:..:..|:|.|:||||||||.|....:.|||||||:..|..||:...:|...|.|..|::|
 Frog   302 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFP 366

  Fly   360 FFTEMLWYVLARYVHTLLGHSHLEGEASLSEDEMAARPHTHLTHHELFGLKEIVMYL-------- 416
            ||..:.|:|....:.||         ..|.||  ...|..:|.|    |:|.::..|        
 Frog   367 FFEAICWFVAKNLLETL---------KELKED--GFHPPNYLKH----GVKALISALKSWMKKES 416

  Fly   417 -----YDLPPQKKNVPSLVLDPVALIKD----VRSLVER------------HC------------ 448
                 :::|..        :.|..|||:    :||:.|.            ||            
 Frog   417 VAEHAFEIPDN--------IRPGHLIKELSKVIRSVEEEGNRPVKSQGIHGHCPVSRSSHEKSSH 473

  Fly   449 ---------KDQQDLAITGVSVLK------------SP----PG--------SQPPFLLYDRTRV 480
                     :|......|.:.:|:            ||    .|        ::|  ||...|..
 Frog   474 HSGRKARRLRDHSTKTPTNLDILEHHTREVLKRLEMSPWEEDAGTYKLNMRFNKP--LLPSSTEP 536

  Fly   481 KQEIKQEIAR---KNAEVIREQQQLEAGRA-----REAESDTSQSTGVGSVIGMGAGVEYSNGVM 537
            .|:::....|   .|..:||:::|....|:     .|.|.|.::|.....:              
 Frog   537 DQKVRDNGIRLLLSNGRIIRDERQPFTDRSLYTADSEDEDDRARSRKAKDI-------------- 587

  Fly   538 KKEQLENGSGVTVGGHGSQPEATFALPTDTLKYRPPKKMHLATALVAAAASSSSGGGGPVAGVGG 602
            |:|:..:.||:                .|..:.:.|..|     ...:..|....|....:.:..
 Frog   588 KQEKPCSTSGM----------------EDKAETQKPLNM-----FFESVKSELRNGSSEYSDISD 631

  Fly   603 SAVVGSSHSPTGGGVGPVTGAGGAISVIATSSSYIEGGQVGG----------------ILNMDNC 651
            |.  ||..:.|                  ....:.|..:..|                |.|:...
 Frog   632 SE--GSEDNCT------------------NQKHFSEESESSGDDDDEEEEEEEERQEPIRNLKEE 676

  Fly   652 HSPEGGGAKL--SPNL--TGTGQPRRRRTRCKNCAACQRSDCGTCPFCMDMVKFGGPGRAKQTCM 712
            ||    |.:|  .||.  .....|::|.                ||              ..|.|
 Frog   677 HS----GRRLPCDPNFPWPDHDSPQKRE----------------CP--------------TSTSM 707

  Fly   713 MRQCLSPMLPVTAQCVYCHLDGWRQTPVSPQTKQLASADGPSALMECSVCYEIAHPDCALSQLDG 777
            .::.:..||                        .:||...|||                      
 Frog   708 EQEAVQGML------------------------SMASLHYPSA---------------------- 726

  Fly   778 TEDAADAKGIVNEDLPNSWECPSC-CRSGKNYDYKPRHFRARQKSSEVRRVSVSHGQGGAEGHA- 840
                          ||...:...| .|.|    |...|.|..|.:.:....|.||....::.|. 
 Frog   727 --------------LPTPAKSTDCNIRGG----YPQLHIRVSQGNGKEHLDSHSHKAANSDHHVK 773

  Fly   841 --------------DGNTLLPP------PVGQYNDFVFTSESEMESGTVSGH---MTHWKHGMKR 882
                          |.:..|.|      |.....:|   :..|.|......|   :.||.....:
 Frog   774 DEGEFSALDWIRQPDASCRLSPQDSCQVPQSLRREF---AHEEYEKAPEDKHYLEIEHWDSAEYQ 835

  Fly   883 HHQLEVKTERNN-SCDTPSPGISPNAIGGDSKVGKRRKSDDGTSVSSSMH-----ESNDAPCGSS 941
            ..:.:.::..:: .|......:||..|.||            |:.:..:|     .||..|..:.
 Frog   836 PEKYDPESSMSSGECHLSDGSLSPTRIYGD------------TAAAVPLHPTKRPASNPPPISNQ 888

  Fly   942 A 942
            |
 Frog   889 A 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367 60/99 (61%)
PRTases_typeI <394..>467 CDD:294217 21/138 (15%)
zf-CXXC 670..716 CDD:251032 6/45 (13%)
PHD_4 721..801 CDD:293471 8/79 (10%)
F-box-like <1073..1108 CDD:289689
leucine-rich repeat 1102..1125 CDD:275381
leucine-rich repeat 1126..1149 CDD:275381
leucine-rich repeat 1150..1173 CDD:275381
AMN1 1166..>1320 CDD:187754
leucine-rich repeat 1174..1213 CDD:275381
leucine-rich repeat 1214..1238 CDD:275381
leucine-rich repeat 1239..1267 CDD:275381
leucine-rich repeat 1268..1292 CDD:275381
leucine-rich repeat 1293..1317 CDD:275381
kdm7aNP_001072664.1 PHD_KDM7 8..57 CDD:277110
JmjC 203..266 CDD:214721 33/74 (45%)
cupin_like 238..338 CDD:304367 60/99 (61%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 445..490 4/44 (9%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 565..607 10/71 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 622..711 21/142 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 754..773 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 872..902 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 86 1.000 Domainoid score I7952
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000253
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.