DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and phf2

DIOPT Version :10

Sequence 1:NP_649864.2 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_005169348.2 Gene:phf2 / 503778 ZFINID:ZDB-GENE-050302-10 Length:1066 Species:Danio rerio


Alignment Length:1203 Identity:285/1203 - (23%)
Similarity:437/1203 - (36%) Gaps:359/1203 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PNAKGVQRRQLRERKQRKLYLEEWSLGD--EDGE------GTRGFSVAEKLESSKF-AQAGMVRE 89
            ||.:....:...::|      :.|:..|  :.|:      |::.|  .::|.|..| :...:|.:
Zfish    51 PNCEKTHGKSTLKKK------KSWNKHDTGQSGDVRPVQNGSQVF--IKELRSRTFPSSEDVVVK 107

  Fly    90 MRGCDLTVAFLQQHGFNIPLLFRDKAGLGLRMPDPQEFTVNDVRLCVGSRRLLDVMDVNTQKNLQ 154
            :.|..||:.:|:::|||.|:|.:.|.|||:.||.| .|.|:||...||...|:||:||..|.:.:
Zfish   108 LSGSQLTLEYLEENGFNEPILIQKKDGLGMAMPAP-TFYVSDVENYVGPDVLVDVVDVTKQTDSK 171

  Fly   155 MTMKEWQQYYDSPQKDRLLNVISLEFSHTRLDRFVQSPEIVRQIDWVDVVWPKQLKDAQREGTNL 219
            |.:||:..||.|..:.::||||:||||..|:...|:||:|||::.||:..||   .||      |
Zfish   172 MKLKEFVDYYYSTNRKKVLNVINLEFSDARMANIVESPQIVRKLSWVENYWP---DDA------L 227

  Fly   220 LGGMMYPKVQKYCLMSVKNCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTDRNLQLYEKWVLSGK 284
            ||   .|||.||||:.||:.||||||:.||.|||||:|:|.|:|:||.||..||.|||:|..|..
Zfish   228 LG---KPKVSKYCLICVKDSYTDFHIECGGASVWYHVLKGEKIFFLIKPTSANLSLYERWRSSSN 289

  Fly   285 QADIFFGDTVEKCARVYLTAGNTFFIPTGWIHAVYTPTQSLVFGGNFLHSFGIVKQLKTASVEDS 349
            .:::||.|.|:||.:..|..|.|.|||:|||:|:.||...|.|.|:|:||..:..|::...||..
Zfish   290 HSEMFFADQVDKCYKCTLKQGQTLFIPSGWINAILTPVDCLAFSGHFVHSLSVEMQMRAYEVEKR 354

  Fly   350 TKVPQKFRYPFFTEMLWYVLARYVHTLLGHSHLEGEASLSEDEMAARPHTHLTHHELFGLK---- 410
            .||.....:..|....|||         |..:||....|.:..  .:|..:|.|    |.|    
Zfish   355 LKVASLTPFSNFETACWYV---------GKYYLEQFKGLHKAN--KQPPPYLVH----GAKIVNG 404

  Fly   411 ---------EIVMYLYDLPPQKKNVPSLVLDPVALIKDVRSLVERHCKDQQDLAITGVSVLKS-- 464
                     .::.:..:||...|        |..||||:...:.        :|......:||  
Zfish   405 AFRSWTKKQALLEHEDELPENMK--------PAQLIKDLAKEIR--------IAENATKAIKSEP 453

  Fly   465 ----PPGSQPPFLLYD-------------------RTRVKQEIKQEIARK--NAEVIREQQQLEA 504
                ||..:||..|.:                   |.:|.:..|...|.|  ....|:|..:.:|
Zfish   454 SNSKPPAEEPPSALSEPEEPMSPAHVSSPSGDKPARKKVPKPPKMPKAPKPPKEPKIKEGGKKKA 518

  Fly   505 GRAREA---ESDTSQSTGVGS--------------VIGMGAGV-----EYSNGVMKKEQL-ENGS 546
            .:.:|.   |...|....:.|              :|..|..:     ...|.|.|.|.: |:..
Zfish   519 KKVKEGVIPEKKPSSLAALESHAKDILNKMDQPKKLIKTGMSIMEKETNKPNDVKKFEMMREHNK 583

  Fly   547 GVTVGG---HGSQPEATFALPTDTLKYRPPKKMHLATALVAAAASSSSGGGGPVAGVGGSAVVGS 608
            ..|...   ..|:|::...:..:. |:......|.......:.::....|...:.....|:|.||
Zfish   584 NKTESKWKYKNSKPDSLLKMEEEH-KFDKSLLSHKDNKFAFSLSNKKLLGSKMLKTQTNSSVFGS 647

  Fly   609 SHS----------------------------------------------------------PTGG 615
            ..:                                                          |...
Zfish   648 IQNIKEEKPKPVRDEYEYVSDEGELKIEEFPIRRKKNAVKREFSFLSNIKEPIQPSKKPKLPPSD 712

  Fly   616 GVGPVTGAGGAISVIATSSSYI----------EGGQVGGILNMDNCHSPEGGGAKLSPNLTGTGQ 670
            ...|.|....::.:...:.:.:          :||...|||::... |.:.||...|.|......
Zfish   713 MKSPDTSDEESLHIDTEAKTDVKGRNSKVSKKKGGSSAGILDLLQA-SKQVGGIDYSNNSQPPAS 776

  Fly   671 PRRRRT--RCKNCAACQRSDCGTCPFCMDMVKFGGPGRAKQTCMMRQCLSPMLPVTAQCVYCHLD 733
            |..:..  ...:.|..|.||                          .||.|.             
Zfish   777 PSTQEAIQGMLSMANLQSSD--------------------------SCLQPF------------- 802

  Fly   734 GWRQTPVSPQTKQLASADGPSALMECSVCYEIAHPDCALSQLDGTEDAADAKGIVN---EDLPNS 795
             |..:.....:...|::..||.                         ||.|.|...   :.||..
Zfish   803 -WSNSQAKNNSHSSAASKKPSG-------------------------AAGAGGNSKRPAKRLPKK 841

  Fly   796 WECPSCCRSGKNYDYKPRHFRARQKSSEVRRVSVSHGQGGAEGHADGNTLLPPPVGQYNDFVFTS 860
            .:..|...|...:|....|..|..|.|                                |:|:.|
Zfish   842 TQKSSSVDSSDMFDDDQDHLEACFKDS--------------------------------DYVYPS 874

  Fly   861 ESEMESGTVSGHMTHWKHGMKRHHQLEVKTERNNSCDTPSPGISPNAIGGDSKVGKRRKSDDGTS 925
            ....|...:      :|...|:         |.|:.|||   .||.|..|.:...:.|.:.:|..
Zfish   875 LESEEDNPI------FKSRSKK---------RKNTDDTP---YSPTARVGPTVPRQERPAREGAR 921

  Fly   926 VSSSMHESNDAPCGSSAEGAGGAGNANVSTNQWSGSGGGGGSRKKNSIRSQLAQQMLNSSTRVLK 990
            |             :|.|....|..|.:|..:.........|.||..|.::.:.::.:.|:....
Zfish   922 V-------------ASIETGLAAAAAKLSHQEEQKIKKKKKSAKKKPIVAEESHKLSHDSSSPEP 973

  Fly   991 KP---------QYVVRPASGTGSSSSSGNGGSASATNGI-------SNGSNQSGANSCGAGNGER 1039
            .|         :|    ::|||.|:    |||.....|:       |:.|:...|:|......||
Zfish   974 TPDSESNMADHEY----STGTGKSA----GGSQPMAPGVFLSHRRPSSSSSSQNASSVPPAKVER 1030

  Fly  1040 GTNNGGLSGSNGLGNQHYSSSQNLALDPTVLKI 1072
            |  |...|.:..|.....::.|.|.   .:|||
Zfish  1031 G--NSTDSKAKRLKKGMATAKQRLG---KILKI 1058

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_649864.2 cupin_RmlC-like 231..331 CDD:477354 54/99 (55%)
CTD_Jhd1-like 399..465 CDD:412024 15/84 (18%)
zf-CXXC 670..716 CDD:366873 5/47 (11%)
PHD_4 721..802 CDD:465288 11/83 (13%)
F-box-like <1073..1105 CDD:463757 285/1203 (24%)
leucine-rich repeat 1102..1125 CDD:275381
leucine-rich repeat 1126..1149 CDD:275381
leucine-rich repeat 1150..1173 CDD:275381
AMN1 1166..>1320 CDD:187754
leucine-rich repeat 1174..1213 CDD:275381
leucine-rich repeat 1214..1238 CDD:275381
leucine-rich repeat 1239..1267 CDD:275381
leucine-rich repeat 1268..1292 CDD:275381
leucine-rich repeat 1293..1317 CDD:275381
phf2XP_005169348.2 None
Blue background indicates that the domain is not in the aligned region.

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