DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm2 and kdm2b

DIOPT Version :10

Sequence 1:NP_649864.2 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_031748490.1 Gene:kdm2b / 448624 XenbaseID:XB-GENE-990506 Length:1258 Species:Xenopus tropicalis


Alignment Length:1490 Identity:474/1490 - (31%)
Similarity:652/1490 - (43%) Gaps:469/1490 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 AKGVQRRQLRERKQRKLYLEEWSLGD-EDGEGTRGFSVAEKLESSKFAQAGMVREMRGCDLTVAF 99
            ||....|:||. ..|..|.|...|.| ||....||||:.:|:.|:.: :...||.|.|.:.|..:
 Frog     3 AKKDSARRLRS-IDRTRYAEHEDLSDVEDMVSIRGFSLEQKISSNSY-RGDFVRYMEGKEFTYEY 65

  Fly   100 LQQHGFNIPLLFRDKAGLGLRMPDPQEFTVNDVRLCVGSRRLLDVMDVNTQKNLQMTMKEWQQYY 164
            :|:....:||||..|.|||::||. |:|||.||:|.|||||::|||||||||::.|::.::.:||
 Frog    66 VQREALRVPLLFSTKEGLGIKMPG-QDFTVRDVKLLVGSRRVVDVMDVNTQKSIDMSLSQFVRYY 129

  Fly   165 DSP--QKDRLLNVISLEFSHTRLDRFVQSPEIVRQIDWVDVVWPKQLKDAQREGTNLLGGMMYPK 227
            ::|  ::::|.||||||||||:|::.|:.|.:|..:||||.:||:.||:.|:|.||::..|.|||
 Frog   130 ETPETEREKLYNVISLEFSHTKLEKVVKRPTVVDAVDWVDNMWPRHLKELQKESTNVIAEMKYPK 194

  Fly   228 VQKYCLMSVKNCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTDRNLQLYEKWVLSGKQADIFFGD 292
            |:||||||||.|:|||||||||||||||:.||.|||||||||..||||||:|:|||||.|||.||
 Frog   195 VKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKVFWLIPPTGHNLQLYEEWLLSGKQTDIFLGD 259

  Fly   293 TVEKCARVYLTAGNTFFIPTGWIHAVYTPTQSLVFGGNFLHSFGIVKQLKTASVEDSTKVPQKFR 357
            ..|.|.|:.|..|.|||||:|||||||||..|||||||.||||.|..||:...:||.|:|..|||
 Frog   260 RSEGCQRIELKQGQTFFIPSGWIHAVYTPADSLVFGGNILHSFNIPMQLRVYEIEDRTRVHAKFR 324

  Fly   358 YPFFTEMLWYVLARYVHTLLGHSHL-----------EGEASL----------------------S 389
            |||:.||.||||.|||.:|...|||           :.::||                      .
 Frog   325 YPFYYEMCWYVLERYVCSLTRRSHLIKEYQRESMITDRKSSLDSLSSDSWLEMEEEFCDVHIKEE 389

  Fly   390 EDEMAARPH-------------------------------------------------------- 398
            :|::..:|.                                                        
 Frog   390 KDDLGEKPSKQSGDESSTTNSTNSNGKDAVEKKQKPTLMQYLKRTLSNDSDESSKSIVHSDFPKT 454

  Fly   399 -------------THLTHHELFGLKEIVMYLYDLPPQKKNVPSLVLDPVALIKDVRSLVERHCKD 450
                         ||||..||.|||.:|..|..||..||.||..:.||.||::||:::::.|..|
 Frog   455 PTGSPATDMPCKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDVKTVLKEHADD 519

  Fly   451 QQDLAITGVSVLKSPPGSQPPFLLYDRTRVKQEIKQEIARKNAEVIREQQQLEAGRAREAESDTS 515
            ...|||:||.|:..|                                              ..||
 Frog   520 DNSLAISGVPVVTWP----------------------------------------------KKTS 538

  Fly   516 QSTGVGSVIGMGAGVEYSNGVMKKEQLENGSGVTVGGHGSQPEATFALPTDTLKYRPPKKMHLAT 580
            ::..||                                                 ||..|     
 Frog   539 KNRAVG-------------------------------------------------RPKGK----- 549

  Fly   581 ALVAAAASSSSGGGGPVAGVGGSAVVGSSHSPTGGGVGPVTGAGGAISVIATSSSYIEGGQVGGI 645
                                                             ||||.:          
 Frog   550 -------------------------------------------------IATSPA---------- 555

  Fly   646 LNMDNCHSPEGGGAKLSPNLTGTGQPRRRRTRCKNCAACQRSDCGTCPFCMDMVKFGGPGRAKQT 710
                         .|||.|.|..| .|||||||:.|.||.|::||.|.||.||.|||||||.||:
 Frog   556 -------------VKLSANRTSAG-ARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQS 606

  Fly   711 CMMRQCLSPMLPVTAQCVYCHLDGWRQTPVSPQTKQLASADGPSA-----LMECSVCYEIAHPDC 770
            |:||||::|:||.||.|:.|...|...           ..||..|     |||||:|.||.||.|
 Frog   607 CIMRQCIAPVLPHTAVCLVCGEAGKED-----------CVDGQEAKFNVMLMECSICNEIIHPGC 660

  Fly   771 ALSQLDGTEDAADAKGIVNEDLPNSWECPSCCRSGK----------------------------- 806
            ..::        ::.|:||::|||.||||.|..:||                             
 Frog   661 LKTK--------ESDGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSLLKEQKV 717

  Fly   807 NYDYK---------------PRHFRARQ-KSSEVRRVSVSHGQGGAEGHADGNTLL--PPPVGQY 853
            |.|.|               |:.....| |...|..|.....:   :||.......  ||.....
 Frog   718 NRDNKELTEIVKKKVEREETPKQIPDEQPKKKPVEGVIKKKPE---DGHIRKKRKFEKPPDPSVR 779

  Fly   854 NDFVFTSESEMESGTVSGHMTHWK---------HGMKRHHQ--------LEVKTERNNSCDTPSP 901
            .......|.::    :......||         ..::|..|        ...|::.::...:.||
 Frog   780 KRLKLVKEEKL----LRKKRRSWKTPDERAMIAKTLRRIKQEPDDDLTEAPPKSKESDQSRSSSP 840

  Fly   902 GISPNAIGGDSKVGK--RRK----------------SDDGTSVSSSMHESNDAPCGSSAEGAGGA 948
            ...|:..|.:.|..|  |||                :.:.....||:...|..|..|..|.....
 Frog   841 TAGPSTEGPELKEKKKIRRKLRVSNKELSKELSKELNQEIQKTESSLANENHHPIKSEPESDNEE 905

  Fly   949 GNANVSTNQWSGSGGGGGSRKKNSIRSQLAQQM---LNSSTRVLKKP------------QYVVR- 997
            ....:|:|   |......|::.|....:|..|:   |.::.||.:.|            ::|:| 
 Frog   906 PKKCISSN---GERMHHFSKELNGTPKELRHQLFPSLKTTPRVSRPPPSLSPPKCMQMERHVIRP 967

  Fly   998 -PASGTGSSSSSGNGGSASATNGISNGSNQSGANSCGAGNGERGTNNGGLSGSNGLGNQHYSSSQ 1061
             |.|....|....||    ||:                                           
 Frog   968 PPISPPPDSLPLANG----ATH------------------------------------------- 985

  Fly  1062 NLALDPTVLKIIFRYLPQDTLVTCCSVCKVWSNAAVDPDLWKKMNCSEHK-MSASLLTAIVRRQP 1125
              .:...|...||.||....|..|..||:.|:....|..||.:::.:..| ::..:|:.|:||||
 Frog   986 --VMQREVWMAIFSYLSHRDLCICMRVCRTWNRWCCDKRLWTQIDLNRCKSITPLMLSGIIRRQP 1048

  Fly  1126 EHLILDWTQIAKRQLAWLVARLPALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVRGLNDAAI 1190
            ..|.|.||.|:|:||:||:.|||||::|:|..|...||.||.:..||.|:||::.:|.||.||.:
 Frog  1049 ASLDLSWTNISKKQLSWLINRLPALRDLNLSGCSWIAVSALCSSSCPLLRTLNVQWVEGLKDAQM 1113

  Fly  1191 RDILSPPKDSRPGLSDSKTRLRDLKVMKLAGTDISDVAVRYITQSLPYLRHLDLSSCQRITDAGV 1255
            ||:||||.|:|||..|::::||::..::|||.||:|.::|.:.:.:|.|..||||.|..:||..:
 Frog  1114 RDLLSPPTDNRPGQIDNRSKLRNITELRLAGLDITDASLRLMIRHMPLLAKLDLSYCNHVTDQSI 1178

  Fly  1256 ---AQIGTSTTATARLTELNLSACRLVSENALEHLAKCEGLIWLDLRHVPQVSTQSVIRF 1312
               ..:||||..|  |.|:|||.|..|::..|....:|..:..:|||...||:.:|..:|
 Frog  1179 NLLTAVGTSTRDT--LLEMNLSDCNNVTDQCLTFFKRCGNICSIDLRFCKQVTKESCEQF 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_649864.2 cupin_RmlC-like 231..331 CDD:477354 76/99 (77%)
CTD_Jhd1-like 399..465 CDD:412024 31/65 (48%)
zf-CXXC 670..716 CDD:366873 30/45 (67%)
PHD_4 721..802 CDD:465288 31/85 (36%)
F-box-like <1073..1105 CDD:463757 12/31 (39%)
leucine-rich repeat 1102..1125 CDD:275381 6/23 (26%)
leucine-rich repeat 1126..1149 CDD:275381 12/22 (55%)
leucine-rich repeat 1150..1173 CDD:275381 9/22 (41%)
AMN1 1166..>1320 CDD:187754 61/150 (41%)
leucine-rich repeat 1174..1213 CDD:275381 20/38 (53%)
leucine-rich repeat 1214..1238 CDD:275381 7/23 (30%)
leucine-rich repeat 1239..1267 CDD:275381 13/30 (43%)
leucine-rich repeat 1268..1292 CDD:275381 9/23 (39%)
leucine-rich repeat 1293..1317 CDD:275381 7/20 (35%)
kdm2bXP_031748490.1 cupin_RmlC-like 198..297 CDD:477354 75/98 (77%)
JHD 303..>338 CDD:465515 19/34 (56%)
CTD_KDM2B 468..534 CDD:412026 31/65 (48%)
zf-CXXC <576..612 CDD:366873 23/35 (66%)
PHD_KDM2B 622..683 CDD:277114 27/79 (34%)
PspC_subgroup_2 <681..901 CDD:468202 36/226 (16%)
F-box_FBXL10 982..1026 CDD:438951 16/92 (17%)
leucine-rich repeat 999..1021 CDD:275381 6/21 (29%)
AMN1 1019..1229 CDD:187754 89/211 (42%)
leucine-rich repeat 1024..1049 CDD:275381 7/24 (29%)
leucine-rich repeat 1050..1072 CDD:275381 12/21 (57%)
leucine-rich repeat 1073..1096 CDD:275381 9/22 (41%)
leucine-rich repeat 1097..1136 CDD:275381 20/38 (53%)
leucine-rich repeat 1137..1161 CDD:275381 7/23 (30%)
leucine-rich repeat 1162..1190 CDD:275381 12/27 (44%)
leucine-rich repeat 1192..1216 CDD:275381 9/23 (39%)
leucine-rich repeat 1217..1241 CDD:275381 7/20 (35%)

Return to query results.
Submit another query.