DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and kdm2ba

DIOPT Version :10

Sequence 1:NP_649864.2 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_068079013.2 Gene:kdm2ba / 406446 ZFINID:ZDB-GENE-040426-2195 Length:873 Species:Danio rerio


Alignment Length:955 Identity:255/955 - (26%)
Similarity:374/955 - (39%) Gaps:292/955 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   531 EYSNGVMKKEQLENGSGVTVGGHGSQPEATFALPTDTLKYRPPKKMHLATALVAAAASSSSGGGG 595
            :|.:...:::||.|                          :|..||..:||...:|.:|||    
Zfish    13 DYDSDTAEQQQLPN--------------------------KPKPKMATSTATTPSATTSSS---- 47

  Fly   596 PVAGVGGSAVVGSSHSPTGGGVGPVTGAGGAISVIATSSSYIEGGQVGGILNMDNCHSPEGGGAK 660
                                              .||:                         .|
Zfish    48 ----------------------------------TATA-------------------------VK 53

  Fly   661 LSPNLTGTGQPRRRRTRCKNCAACQRSDCGTCPFCMDMVKFGGPGRAKQTCMMRQCLSPMLPVTA 725
            |..|.|.:| .|||||||:.|.||.|::||.|.||.||.|||||||.||:|:||||::|:||.||
Zfish    54 LPSNRTSSG-ARRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA 117

  Fly   726 QCVYCHLDGWRQTPVSPQTKQLASADGPSALMECSVCYEIAHPDCALSQLDGTEDAADAKGIVNE 790
            .||.|...|...|......|..|      .|||||:|.||.||:|.        ...||.|:||:
Zfish   118 VCVVCGEAGKEDTLDDEDEKFNA------MLMECSICNEIVHPNCL--------KVKDAAGVVND 168

  Fly   791 DLPNSWECPSCCRSGKNYDYKPRHFRARQK-------SSEVRRVSVSHGQGGAEGHADGN----- 843
            :|||.||||.|..:||...      ..:||       :|.:....:...:.|.:|..:|:     
Zfish   169 ELPNCWECPKCNYAGKTGK------ACKQKRGPGFKYASNLPGSLLREQKAGRDGREEGDQTSTG 227

  Fly   844 ----------------------TLLPP---------PVGQYNDF------VFTSESEMESGTVS- 870
                                  :.|||         |..:..:|      :|..:.|.|..:.. 
Zfish   228 PASIKRKTEREETPRLKTEDLPSRLPPLLSPSGLPRPRSEVPNFLRKKRKLFDDDEEEEEASAKK 292

  Fly   871 -------------GHMTHWK----------------------HGMKRHHQL---EVKTERNNSCD 897
                         ..::|.|                      ..:|:.:.:   |.:.|.:...|
Zfish   293 KQKKPWRPEEPLIPKLSHMKAEEEEDNSDEEEERQEKREQPRRSIKKDYSIVRKEEEREEDRRED 357

  Fly   898 TPSPGISPNAIGGDSKV-------------------GKR-RKSDDGTSVSSSMHESNDAPCGSSA 942
            ...|..|.......||.                   ||| |.|.......|...||:.:.|.|..
Zfish   358 RDPPFRSLKEFHNMSKEEDHDEEKEDDDEEEEEESNGKRGRDSSPALKNLSLSLESDASRCSSPR 422

  Fly   943 EGAGGAGNANVSTNQWSGSGGGGGSRKKNSIRSQLAQQMLNSSTRVLKKPQYVVRPASGTGSSSS 1007
            .|....|:   .|.:.:........|:|...| ||:.::.......:::.::.:...:.....|.
Zfish   423 AGPSSEGS---ETQEKAPRARARRHRRKPPNR-QLSAELSKQLNMEIRRTEHSLANENQQPLMSE 483

  Fly  1008 SGNGGSASATNGISNGSNQSGANSCGAGNG-ERGTNNGGLSGS----------NGLG--NQHYSS 1059
            ..:..:.....|:.||   :..|:.|.|.| |||.  ||.:|.          ||..  .:|:..
Zfish   484 PEDSENEEPKRGLRNG---TAGNAGGGGGGVERGA--GGEAGGERPHLRAREMNGTSWELRHFYP 543

  Fly  1060 SQNLAL-----DPTVLKI---------------------------------------------IF 1074
            .|...|     .|||..:                                             ||
Zfish   544 PQITPLGLNRSSPTVRPLPARSPPKCVQMERHVIRPPPICPPPDRLPLADGRNHIAPREAWLAIF 608

  Fly  1075 RYLPQDTLVTCCSVCKVWSNAAVDPDLWKKMNCSEHK-MSASLLTAIVRRQPEHLILDWTQIAKR 1138
            .:|....|..|..||:.|:....|..||.:::....| ::..:|:.|:||||..|.|.||.|:|:
Zfish   609 SHLSHRELCVCMRVCRTWNRWCCDKRLWTRIDLKRCKSITPLMLSGIIRRQPITLDLSWTNISKK 673

  Fly  1139 QLAWLVARLPALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVRGLNDAAIRDILSPPKDSRPG 1203
            ||:||:.|||.|:.|.|..|...||.||.|..||.|:||||.:|.||.|..:||:||||.|:|||
Zfish   674 QLSWLINRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDLQWVEGLKDPQMRDLLSPPTDNRPG 738

  Fly  1204 LSDSKTRLRDLKVMKLAGTDISDVAVRYITQSLPYLRHLDLSSCQRITDAGVAQI-GTSTTATAR 1267
            ..|::::||::..::|||.||:|.::|.|.:::|.|..||||.|..|.|..|..: ...||....
Zfish   739 QMDTRSKLRNVTDLRLAGLDITDSSLRLIIKNMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDS 803

  Fly  1268 LTELNLSACRLVSENALEHLAKCEGLIWLDLRHVPQVSTQSVIRF 1312
            ||::|||.|..|::.:|.:..:|..:..:|:|...|||.|:..||
Zfish   804 LTDVNLSVCNRVTDQSLSYFKRCGSICRIDMRFSKQVSRQACERF 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_649864.2 cupin_RmlC-like 231..331 CDD:477354
CTD_Jhd1-like 399..465 CDD:412024
zf-CXXC 670..716 CDD:366873 30/45 (67%)
PHD_4 721..802 CDD:465288 34/80 (43%)
F-box-like <1073..1105 CDD:463757 11/31 (35%)
leucine-rich repeat 1102..1125 CDD:275381 6/23 (26%)
leucine-rich repeat 1126..1149 CDD:275381 12/22 (55%)
leucine-rich repeat 1150..1173 CDD:275381 10/22 (45%)
AMN1 1166..>1320 CDD:187754 63/148 (43%)
leucine-rich repeat 1174..1213 CDD:275381 21/38 (55%)
leucine-rich repeat 1214..1238 CDD:275381 8/23 (35%)
leucine-rich repeat 1239..1267 CDD:275381 11/28 (39%)
leucine-rich repeat 1268..1292 CDD:275381 9/23 (39%)
leucine-rich repeat 1293..1317 CDD:275381 8/20 (40%)
kdm2baXP_068079013.2 None
Blue background indicates that the domain is not in the aligned region.

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