DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and Fbxl21

DIOPT Version :9

Sequence 1:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_038951543.1 Gene:Fbxl21 / 306750 RGDID:1305555 Length:460 Species:Rattus norvegicus


Alignment Length:251 Identity:57/251 - (22%)
Similarity:91/251 - (36%) Gaps:67/251 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1069 VLKIIFRYLPQDTLVTCCSVCKVWSNAAVDPDLWKKMNCSEHKMSAS--------LLTAIVRRQP 1125
            |:..||:|||........|||:.|:.....||||:|.....::.:.|        |:..|:::..
  Rat    75 VILRIFQYLPLVDRARASSVCRSWNEVFHIPDLWRKFEFELNQSATSYFKSTHPDLIQQIIKKHA 139

  Fly  1126 EHL------ILDWTQIAKRQLAWLVARLPALKNLS-LQNCPIQAVLALHTCLCPPLQTLDLS-FV 1182
            .||      :...|:.|:          .|...|| |.||.|| .|.|.:...|....:..| ||
  Rat   140 AHLQYVSFKVDSSTESAE----------AACHILSQLVNCSIQ-TLGLISTAKPSFMNMPKSHFV 193

  Fly  1183 RGLNDAAIRDILSPPKDSRPGLSDSKTRLRDLKVMKLAGTDISDVAVR-YITQSLPYLRHLDLSS 1246
            ..|....:..                   :.|..:|:..|.:.|.::: .:..:...||.|.:||
  Rat   194 SALTVVFVNS-------------------KSLSSIKIEDTPVDDPSLKILVANNSDTLRLLKMSS 239

  Fly  1247 CQRITDAGVAQIGTSTTATARL------------------TELNLSACRL--VSEN 1282
            |..::..|:..:.........|                  |.:||...|:  ||||
  Rat   240 CPHVSSDGILCVADHCQGLRELALNYYILSDELLLALSSETHVNLEHLRIDVVSEN 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367
PRTases_typeI <394..>467 CDD:294217
zf-CXXC 670..716 CDD:251032
PHD_4 721..801 CDD:293471
F-box-like <1073..1108 CDD:289689 14/34 (41%)
leucine-rich repeat 1102..1125 CDD:275381 5/30 (17%)
leucine-rich repeat 1126..1149 CDD:275381 4/28 (14%)
leucine-rich repeat 1150..1173 CDD:275381 9/23 (39%)
AMN1 1166..>1320 CDD:187754 26/139 (19%)
leucine-rich repeat 1174..1213 CDD:275381 4/39 (10%)
leucine-rich repeat 1214..1238 CDD:275381 4/24 (17%)
leucine-rich repeat 1239..1267 CDD:275381 7/27 (26%)
leucine-rich repeat 1268..1292 CDD:275381 9/35 (26%)
leucine-rich repeat 1293..1317 CDD:275381
Fbxl21XP_038951543.1 F-box-like 68..111 CDD:403981 14/35 (40%)
leucine-rich repeat 206..231 CDD:275381 4/24 (17%)
leucine-rich repeat 232..257 CDD:275381 7/24 (29%)
leucine-rich repeat 258..283 CDD:275381 2/24 (8%)
leucine-rich repeat 284..318 CDD:275381 6/12 (50%)
leucine-rich repeat 329..365 CDD:275381
AMN1 <359..>424 CDD:187754
leucine-rich repeat 366..392 CDD:275381
leucine-rich repeat 393..418 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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