DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and Kdm2b

DIOPT Version :9

Sequence 1:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_038945396.1 Gene:Kdm2b / 304495 RGDID:1310217 Length:1350 Species:Rattus norvegicus


Alignment Length:1536 Identity:482/1536 - (31%)
Similarity:673/1536 - (43%) Gaps:481/1536 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 RQLRERKQRKLYLEEWSLGD-EDGEGTRGFSVAEKLESSKFAQAGMVREMRGCDLTVAFLQQHGF 105
            |:|| ...|:.|.|...|.| |:....||||:.|||.|..: |...|..|.|.|....::|:...
  Rat     9 RRLR-AIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLY-QGDFVHAMEGKDFNYEYVQREAL 71

  Fly   106 NIPLLFRDKAGLGLRMPDPQEFTVNDVRLCVGSRRLLDVMDVNTQKNLQMTMKEWQQYYDSP--Q 168
            .:||:||||.|||::|||| :|||.||:|.||||||:|||||||||..:|:|.::.:||::|  |
  Rat    72 RVPLVFRDKDGLGIKMPDP-DFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQ 135

  Fly   169 KDRLLNVISLEFSHTRLDRFVQSPEIVRQIDWVDVVWPKQLKDAQREGTNLLGGMMYPKVQKYCL 233
            :|:|.||||||||||:|:..|:.|.:|..:||||.:||:.||:.|.|.||.|..|.||||:||||
  Rat   136 RDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNALAEMKYPKVKKYCL 200

  Fly   234 MSVKNCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTDRNLQLYEKWVLSGKQADIFFGDTVEKCA 298
            ||||.|:|||||||||||||||:.||.|:|||||||..||.|||:|||||||:|||.||.||:|.
  Rat   201 MSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQ 265

  Fly   299 RVYLTAGNTFFIPTGWIHAVYTPTQSLVFGGNFLHSFGIVKQLKTASVEDSTKVPQKFRYPFFTE 363
            |:.|..|.|||||:|||||||||..|||||||.||||.:..||:...:||.|:|..||||||:.|
  Rat   266 RIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYE 330

  Fly   364 MLWYVLARYVHTLLGHSHL---------------------------------------------- 382
            |.||||.|||:.:...|:|                                              
  Rat   331 MCWYVLERYVYCVTQRSYLTQEYQRELMLIDAPRKNSVDGFSSDSWLEMEEESREQQLQEEEDKE 395

  Fly   383 -EGEA-------------------SLSEDEMAARPH----------------------------- 398
             ||:.                   |..:|....:|.                             
  Rat   396 EEGDGADKTPKPPTEGPTSPTSTQSEDQDSTGKKPKAPAMRFLKRTLSNESEESVKSTAMPVDYP 460

  Fly   399 ---------------THLTHHELFGLKEIVMYLYDLPPQKKNVPSLVLDPVALIKDVRSLVERHC 448
                           ||||..||.|||.:|..|..||..||.||..:.||.||::.|:.      
  Rat   461 KTPTGSPATEVSTKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKG------ 519

  Fly   449 KDQQDLAITGVSVLKSPPGSQ--------PPFLLYDRTRVKQEIKQEIARKNAEVIREQQQLEAG 505
            ||             :.||..        ||:.:       :::|..::.               
  Rat   520 KD-------------ANPGCPGDFCAVCCPPWGV-------EKLKLTLSE--------------- 549

  Fly   506 RAREAESDTSQSTGVGSVIGMGAGVEYSNGVMKKEQLENGSGVTVGGHGSQPEATFALPTDTLKY 570
                     :||:|         ..|.:..|: ||.:::...:.:.|          :|..:...
  Rat   550 ---------NQSSG---------DQENTANVL-KEHVDDDPNLAITG----------VPVVSWPK 585

  Fly   571 RPPKKMHLATALVAAAASSSSGGGGPVAGVGGSAVVGSSHSPTGGGVGPVTGAGGAISVIATSSS 635
            :.||                            :.|||...    |.:||.:              
  Rat   586 KTPK----------------------------NRVVGRPK----GKLGPAS-------------- 604

  Fly   636 YIEGGQVGGILNMDNCHSPEGGGAKLSPNLTGTGQPRRRRTRCKNCAACQRSDCGTCPFCMDMVK 700
                                  ..||:.|.|..| .|||||||:.|.||.|::||.|.||.||.|
  Rat   605 ----------------------AVKLAANRTTAG-ARRRRTRCRKCEACLRTECGECHFCKDMKK 646

  Fly   701 FGGPGRAKQTCMMRQCLSPMLPVTAQCVYCHLDGWRQTPVSPQTK-QLASADGPSALMECSVCYE 764
            ||||||.||:|:||||::|:||.||.|:.|...|...|....:.| .|       .|||||:|.|
  Rat   647 FGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNL-------MLMECSICNE 704

  Fly   765 IAHPDCALSQLDGTEDAADAKGIVNEDLPNSWECPSCCRSGK----------------------- 806
            |.||.|.        ...:::|:||::|||.||||.|..:||                       
  Rat   705 IIHPGCL--------KIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSL 761

  Fly   807 ------NYDYK---------------PR-----------------------HFRAR------QKS 821
                  |.|.|               ||                       |.|.:      |:.
  Rat   762 LKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPTDGILRRKSDDVHLRRKRKYEKPQEL 826

  Fly   822 SEVRRVSVSHGQGGAEGHADGNTLLP-PPVGQ-----YNDFVFTSESEMESG----TVSGHMTHW 876
            |..:|.|......|:..|     |.| ||:|.     :...:...:.:::.|    .:......|
  Rat   827 SARKRASTLQTSPGSSSH-----LSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLLRKKRRSW 886

  Fly   877 KHG----------MKRHHQ--------LEVKTERNNSCDTPSPGISPNAIGGDS-----KVGKRR 918
            |:.          ::|..|        ...||..::...:.||...|:..|.:.     ||..||
  Rat   887 KNAEDRLSLANKPLRRFKQEPEDDLPEAPPKTRESDQSRSSSPTAGPSTEGAEGPEEKRKVKMRR 951

  Fly   919 K----------------SDDGTSVSSSMHESNDAPCGSSAEGAGGAGNANVS----TNQWSGSGG 963
            |                :.:.....|::...|..|..|..|.........:|    .:::| .|.
  Rat   952 KRRLPNKELSKELSKELNHEIQKTESTLAHENHQPIKSEPESENEEPKRPLSHCERPHRFS-KGL 1015

  Fly   964 GGGSRKKNSIRSQLAQQMLNSSTRVLKKP-------------QYVVRPASGTGSSSSSGNGGSAS 1015
            .|..|:   :|..|... |.|..||:.:|             ::|:||...:....|        
  Rat  1016 NGTPRE---LRHSLGPG-LRSPPRVISRPPPSTSPPKCIQMERHVIRPPPISPPPDS-------- 1068

  Fly  1016 ATNGISNGSNQSGANSCGAGNGERGTNNGGLSGSNGLGNQHYSSSQNLALDPTVLKIIFRYLPQD 1080
                                          |...:|..:         .:...|...:|.||...
  Rat  1069 ------------------------------LPLDDGAAH---------VMHREVWMAVFSYLSHQ 1094

  Fly  1081 TLVTCCSVCKVWSNAAVDPDLWKKMNCSEHK-MSASLLTAIVRRQPEHLILDWTQIAKRQLAWLV 1144
            .|..|..||:.|:....|..||.:::.:..| ::..:|:.|:||||..|.|.||.|:|:||:||:
  Rat  1095 DLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLI 1159

  Fly  1145 ARLPALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVRGLNDAAIRDILSPPKDSRPGLSDSKT 1209
            .|||.|::|.|..|...||.||.:..||.|:|||:.:|.||.||.:||:||||.|:|||..|:::
  Rat  1160 NRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRS 1224

  Fly  1210 RLRDLKVMKLAGTDISDVAVRYITQSLPYLRHLDLSSCQRITDAGV---AQIGTSTTATARLTEL 1271
            :||::..::|||.||:||::|.|.:.:|.|..|.||.|..:||..:   ..:||:|..:  |||:
  Rat  1225 KLRNIVELRLAGLDITDVSLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDS--LTEI 1287

  Fly  1272 NLSACRLVSENALEHLAKCEGLIWLDLRHVPQVSTQSVIRF 1312
            |||.|..|::..|....:|..:..:|||:..||:.:...:|
  Rat  1288 NLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQF 1328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367 76/99 (77%)
PRTases_typeI <394..>467 CDD:294217 25/116 (22%)
zf-CXXC 670..716 CDD:251032 30/45 (67%)
PHD_4 721..801 CDD:293471 31/80 (39%)
F-box-like <1073..1108 CDD:289689 11/34 (32%)
leucine-rich repeat 1102..1125 CDD:275381 6/23 (26%)
leucine-rich repeat 1126..1149 CDD:275381 12/22 (55%)
leucine-rich repeat 1150..1173 CDD:275381 9/22 (41%)
AMN1 1166..>1320 CDD:187754 61/150 (41%)
leucine-rich repeat 1174..1213 CDD:275381 21/38 (55%)
leucine-rich repeat 1214..1238 CDD:275381 9/23 (39%)
leucine-rich repeat 1239..1267 CDD:275381 10/30 (33%)
leucine-rich repeat 1268..1292 CDD:275381 10/23 (43%)
leucine-rich repeat 1293..1317 CDD:275381 6/20 (30%)
Kdm2bXP_038945396.1 JmjC 151..226 CDD:214721 46/74 (62%)
cupin_RmlC-like 198..304 CDD:424065 81/105 (77%)
JHD 303..>338 CDD:407680 18/34 (53%)
CTD_KDM2B 476..584 CDD:412026 38/177 (21%)
zf-CXXC <626..662 CDD:366873 23/35 (66%)
PHD_KDM2B 672..733 CDD:277114 27/75 (36%)
PTZ00449 <731..967 CDD:185628 38/240 (16%)
F-box-like 1082..1120 CDD:403981 12/37 (32%)
leucine-rich repeat 1116..1140 CDD:275381 6/23 (26%)
AMN1 1132..1321 CDD:187754 85/190 (45%)
leucine-rich repeat 1141..1164 CDD:275381 12/22 (55%)
leucine-rich repeat 1165..1188 CDD:275381 9/22 (41%)
leucine-rich repeat 1189..1228 CDD:275381 21/38 (55%)
leucine-rich repeat 1229..1253 CDD:275381 9/23 (39%)
leucine-rich repeat 1254..1283 CDD:275381 10/28 (36%)
leucine-rich repeat 1284..1308 CDD:275381 10/23 (43%)
leucine-rich repeat 1309..1333 CDD:275381 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 126 1.000 Domainoid score I5292
eggNOG 1 0.900 - - E1_KOG1633
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 773 1.000 Inparanoid score I510
OMA 1 1.010 - - QHG50015
OrthoDB 1 1.010 - - D165446at33208
OrthoFinder 1 1.000 - - FOG0000253
OrthoInspector 1 1.000 - - otm45152
orthoMCL 1 0.900 - - OOG6_104082
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1005
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.830

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