DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and Amn1

DIOPT Version :9

Sequence 1:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:NP_001008334.2 Gene:Amn1 / 302032 RGDID:1308119 Length:258 Species:Rattus norvegicus


Alignment Length:179 Identity:43/179 - (24%)
Similarity:80/179 - (44%) Gaps:20/179 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly  1148 PALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVR----GLNDAAIRDILSPPKD--------- 1199
            |.::.|.|::|.|..|...|.|.|..|:.|:|...|    .:....|:.:.|...|         
  Rat    61 PEVQRLDLRSCNISDVALQHLCKCRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEISLKGC 125

  Fly  1200 ---SRPGLSDSKTRLRDLKVMKLAG-TDISDVAVRYITQSLPYLRHLDLSSCQRITDAGVAQIGT 1260
               :..|:.......:.||::.|.| ..|:|.::..:.::.|:|:.:|.|:.| ::|.||..: .
  Rat   126 CSVTDEGVLALALNCQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQ-VSDNGVVAL-V 188

  Fly  1261 STTATARLTELNLSACRLVSENALE-HLAKCEGLIWLDLRHVPQVSTQS 1308
            |.....:|.|:|:..|..:::.|:| .|..|..:..|.....|.::..|
  Rat   189 SGPCAKQLEEINMGYCINLTDKAVEAALTACPQICILLFHGCPLITDHS 237

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367
PRTases_typeI <394..>467 CDD:294217
zf-CXXC 670..716 CDD:251032
PHD_4 721..801 CDD:293471
F-box-like <1073..1108 CDD:289689
leucine-rich repeat 1102..1125 CDD:275381