DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and jhdm-1

DIOPT Version :10

Sequence 1:NP_649864.2 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:NP_498418.3 Gene:jhdm-1 / 175919 WormBaseID:WBGene00020821 Length:1149 Species:Caenorhabditis elegans


Alignment Length:521 Identity:187/521 - (35%)
Similarity:266/521 - (51%) Gaps:78/521 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PAKSNSNNSSSGGNNNNGNGNLSPNAKGVQRRQLRERKQRKLYLEEWSLGDEDGEGTRGFSVAE- 74
            |.|..||..:.      .||.     ||.       :|.||....|......:||.|.||..:. 
 Worm     2 PPKRKSNGKTP------ANGK-----KGA-------KKARKESSSEHEHSASEGEETTGFDKSSL 48

  Fly    75 ----------KLESSKFAQAGMVREMRGCDLTVAFLQQHGFNIPLLFR-DKAGLGLRMPDPQEFT 128
                      .:....|.....|..|....|.:.|..::|.:.|:.|| |...:|:.:|.| :|:
 Worm    49 QRCVNFDFEALMNDPSFQHPEFVHTMDPEALNLEFYDKNGLDNPIHFRCDPKRIGMTLPSP-DFS 112

  Fly   129 VNDVRLCVGSRRLLDVMDVNTQKNLQMTMKEWQQYYDSPQKDR--LLNVISLEFSHTRLDRFVQS 191
            |:||...||..|:::|:.|..|.:::|:::|:..:|.:||:.|  |.||:|||||.|.|:..|:|
 Worm   113 VDDVLELVGGNRMIEVVQVQNQGSVKMSLQEFINFYKTPQEKREVLYNVLSLEFSQTPLEDLVKS 177

  Fly   192 PEIVRQIDWVDVVWPKQLKDAQREGTNLLGGM---------MYPKVQKYCLMSVKNCYTDFHIDF 247
            ||:|||||||...||    ||.|:......|.         .:||||.||||||.||||||||||
 Worm   178 PELVRQIDWVGNQWP----DALRQRWISFNGRDKKFYNPHHTFPKVQNYCLMSVANCYTDFHIDF 238

  Fly   248 GGTSVWYHILRGSKVFWLIPPTDRNLQLYEKWVLSGKQADIFFGDTVEKCARVYLTAGNTFFIPT 312
            .|||||||:|:|.|||||||||:.|..:|::::.:... :.|||.:||||....|..|:|..||:
 Worm   239 SGTSVWYHVLKGRKVFWLIPPTETNFFIYQEFIKTVND-NAFFGKSVEKCHVAILEPGDTMLIPS 302

  Fly   313 GWIHAVYTPTQSLVFGGNFLHSFGIVKQLKTASVEDSTKVPQKFRYPFFTEMLWYVLARYVHTLL 377
            |||||||||..|||||||||||.....||:...||:...:.:|||.|:..|:::||:|.||....
 Worm   303 GWIHAVYTPDDSLVFGGNFLHSQSCKTQLRVYQVENKLNITRKFRLPYNEELIFYVIADYVKQWT 367

  Fly   378 GHSHLE----GEASLSEDEMAARPHTHLTHHELFGLKEIVMYLYDLPPQKKNVPSLVLDPVALIK 438
            |..::.    .:|..  |.:..:..|...||     |:|....|:...:..|  .::.......|
 Worm   368 GREYVRPLRIEDAKY--DYVGDKWKTAGGHH-----KKIEYSDYETGVELTN--DMIKGDEESTK 423

  Fly   439 DVRSLVERHCKDQQDLAITGVSVLKSPPGSQPPFLL-------YDRTRVK-QEIKQEI-ARKNAE 494
            |...::..|.::         |:...|..|:..|..       .|...|| ||.|:|: ||::||
 Worm   424 DEVKVIAMHAEN---------SLFGYPMVSKATFSADTGLEEEADEDEVKYQETKEEMDARRDAE 479

  Fly   495 V 495
            :
 Worm   480 I 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_649864.2 cupin_RmlC-like 231..331 CDD:477354 63/99 (64%)
CTD_Jhd1-like 399..465 CDD:412024 11/65 (17%)
zf-CXXC 670..716 CDD:366873
PHD_4 721..802 CDD:465288
F-box-like <1073..1105 CDD:463757
leucine-rich repeat 1102..1125 CDD:275381
leucine-rich repeat 1126..1149 CDD:275381
leucine-rich repeat 1150..1173 CDD:275381
AMN1 1166..>1320 CDD:187754
leucine-rich repeat 1174..1213 CDD:275381
leucine-rich repeat 1214..1238 CDD:275381
leucine-rich repeat 1239..1267 CDD:275381
leucine-rich repeat 1268..1292 CDD:275381
leucine-rich repeat 1293..1317 CDD:275381
jhdm-1NP_498418.3 cupin_RmlC-like 222..321 CDD:477354 63/99 (64%)
Herpes_UL46 <1051..1102 CDD:355696
Blue background indicates that the domain is not in the aligned region.

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