DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and fbxl13

DIOPT Version :9

Sequence 1:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_017209779.1 Gene:fbxl13 / 101883454 ZFINID:ZDB-GENE-140106-120 Length:796 Species:Danio rerio


Alignment Length:313 Identity:71/313 - (22%)
Similarity:127/313 - (40%) Gaps:67/313 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1041 TNNGGLSGSNGLGNQHYSSSQNLALDPTVLKI-IFRYLPQDTLVTCCSVCKVWSNAAVDPDLWKK 1104
            :.|.|:...:|        ..||:|.|..|.: ||:.|....|:.|..||:.|........||.:
Zfish   209 SQNSGIPQGDG--------QDNLSLLPNRLFLKIFQSLGVRDLLKCAQVCQSWKAITQISSLWTE 265

  Fly  1105 MNCSEHK--MSASLLTAIVRRQPEHLI------------LDWTQIAKRQLAWLVARLPALKNLSL 1155
            ::.|...  ::..::..|:|....::|            |.:.:|:.....:        :..:.
Zfish   266 IDFSPESSWITDQMVERILRLHRVYVISVNLCGCNMVQRLSFRRISTFTFIY--------QTTAF 322

  Fly  1156 QNCPIQAVLALHTCL----CPPLQTLDLSFVRGLNDAAIRDILSPPKDSRPGLSDSKTRLRDLKV 1216
            ..|.:..:...:|.:    |..||.||||....:||..::.||.              ..:.|..
Zfish   323 IFCFVNLIKIQNTFVFKGQCRNLQELDLSECPTVNDENMKMILE--------------GCQSLLS 373

  Fly  1217 MKLAGTDISDVAVRYI-TQSLPYLRHLDLSSCQRITDAGVAQIGTSTTATARLTELNLSACRLVS 1280
            :.||.|.|::..::.: ::....||.|:|:.|...:|.|: |..|:.|...||..||||.|..::
Zfish   374 LNLACTHIANATIKVLASRCCVMLRSLNLAYCIHFSDKGL-QYLTTGTGCRRLRHLNLSGCSQIT 437

  Fly  1281 ENALEHLAK-CEGLIWLDLRHVPQVSTQSVIRFASNSKHDLCVRDIKLVERRR 1332
            .:....:|: |..|..:.|..:|.::             |:||:  .||.|.|
Zfish   438 VDGFTSVAETCNSLQQIVLNDLPTLT-------------DICVQ--VLVSRCR 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367
PRTases_typeI <394..>467 CDD:294217
zf-CXXC 670..716 CDD:251032
PHD_4 721..801 CDD:293471
F-box-like <1073..1108 CDD:289689 10/34 (29%)
leucine-rich repeat 1102..1125 CDD:275381 4/24 (17%)
leucine-rich repeat 1126..1149 CDD:275381 3/34 (9%)
leucine-rich repeat 1150..1173 CDD:275381 3/26 (12%)
AMN1 1166..>1320 CDD:187754 39/159 (25%)
leucine-rich repeat 1174..1213 CDD:275381 10/38 (26%)
leucine-rich repeat 1214..1238 CDD:275381 5/24 (21%)
leucine-rich repeat 1239..1267 CDD:275381 10/27 (37%)
leucine-rich repeat 1268..1292 CDD:275381 8/24 (33%)
leucine-rich repeat 1293..1317 CDD:275381 3/23 (13%)
fbxl13XP_017209779.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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