DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm2 and fbxl19

DIOPT Version :9

Sequence 1:NP_001262400.1 Gene:Kdm2 / 41090 FlyBaseID:FBgn0037659 Length:1345 Species:Drosophila melanogaster
Sequence 2:XP_031748792.1 Gene:fbxl19 / 100486811 XenbaseID:XB-GENE-994853 Length:676 Species:Xenopus tropicalis


Alignment Length:728 Identity:206/728 - (28%)
Similarity:317/728 - (43%) Gaps:154/728 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   669 GQPRRRRTRCKNCAACQRSDCGTCPFCMDMVKFGGPGRAKQTCMMRQCLSPMLPVTAQCVYCHLD 733
            |..|||||||:.|.||.|::||.|.||.||.|||||||.||:|:.|||.:|:||.||.|:.|...
 Frog    24 GAARRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCLKRQCTAPVLPHTAVCLLCGDA 88

  Fly   734 GWRQTPVSPQTKQLASADGPSALMECSVCYEIAHPDCALSQLDGTEDAADAKGIVNEDLPNSWEC 798
            |...|....:.|...|      ||||::|.||.||.|.        ....::.::|.::||.|||
 Frog    89 GKEDTAQEEEQKFNLS------LMECTICNEIVHPGCI--------KMGKSEAVINTEIPNCWEC 139

  Fly   799 PSCCRSGK-NYDYKPRHFRARQKSSE--VRRVSVSHGQGGAEGHADGNTLLPPPVGQYNDFVFTS 860
            |.|.|.|: :.|......:.|..:.|  ||.........|.:..:|.|.              ..
 Frog   140 PKCKREGRTSKDCLDSSGKRRLDNGEDAVRWKLTDDPAPGKKKSSDENA--------------GH 190

  Fly   861 ESEMESGTVSGHMTHWKHGMKRHHQLEVKTERNNSCDTPSPGISPNAIGGDSKVGKRRKSDDGTS 925
            :.:.|.|..|      :.|:|:    :||.|::.......|.:..:.:....:..:|.|.:....
 Frog   191 KRKKEQGPQS------EAGLKK----KVKAEKDKKVKKIEPPVPADPVPPLDRSHQREKIERFKQ 245

  Fly   926 V--------SSSMHESNDAPCGSSAEGAGGAGNANVSTNQWSGSGGGGGSRKKNSIRSQLAQQML 982
            :        ||:...|:|:...|.::|:.|:.:        :|.||||..::.            
 Frog   246 MCQMLERARSSTSSSSSDSDSDSDSKGSRGSSD--------TGEGGGGDGQES------------ 290

  Fly   983 NSSTRVLKKPQYVVRPASGTGSSSSSGNGGSASATNGISNG------------SNQSGANSCGAG 1035
                          |.:..|.|......||:....||..||            .|:.|.   |.|
 Frog   291 --------------RISFSTSSEEDEDEGGAGDGRNGTRNGKQKPPRANWREKENRRGG---GVG 338

  Fly  1036 NGERGTNNGGLSGSNGLGNQHYSSSQNL--------------------------ALDPTVLKI-- 1072
            |     |..|::|.|  ..|..|.:|.|                          :.:|..|.:  
 Frog   339 N-----NRKGITGRN--TGQAVSRTQLLKRPLVPSPPKPAPLQLERHVVRPPPHSPEPDSLPLDG 396

  Fly  1073 -------------IFRYLPQDTLVTCCSVCKVWSNAAVDPDLWKKMNCSEHK-MSASLLTAIVRR 1123
                         :||:|.|..|..|..||:.|:....|..||..::.|..| ::..:|:.||||
 Frog   397 GTDHVMQRGVWLSVFRHLGQKELCICMRVCRTWNRWCCDRRLWTSIDLSRRKSITPPMLSGIVRR 461

  Fly  1124 QPEHLILDWTQIAKRQLAWLVARLPALKNLSLQNCPIQAVLALHTCLCPPLQTLDLSFVRGLNDA 1188
            ||..|.|.||.|:::||.||:.||..||.|.:..|...||.:|.|...|.|..|||.:|:|:..:
 Frog   462 QPIRLDLSWTNISEKQLTWLIHRLQGLKELLVAGCTWSAVSSLCTASFPCLSLLDLGWVQGMKTS 526

  Fly  1189 AIRDILSPP-KDSRPGLSDSKTRLRDLKVMKLAGTDISDVAVRYITQSLPYLRHLDLSSCQRITD 1252
            .:|::|||| .|.:..:.|.:.||..|..::|.|.:|.|.|:|.:.:..|.|..||||.|.:::|
 Frog   527 HLRELLSPPSSDCKTVVPDPRGRLPSLSELRLCGLEIGDSALRLLLRHTPRLHRLDLSHCVQLSD 591

  Fly  1253 AGVAQIGTSTTATARLTELNLSACRLVSENALEHLAKCEGLIWLDLRHVPQVSTQSVIRFASNSK 1317
            .|:..:..:::....||.|||:.|..:::.:|....:|..|..:|||....::::...:...:..
 Frog   592 HGIHILTAASSLRDSLTHLNLTGCHRLTDQSLAFFKRCPHLQLVDLRSCRLLTSEGFQKLLQDPP 656

  Fly  1318 HD------LCVRD 1324
            .|      .||.|
 Frog   657 SDPDGKPFQCVED 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm2NP_001262400.1 cupin_like 231..331 CDD:304367
PRTases_typeI <394..>467 CDD:294217
zf-CXXC 670..716 CDD:251032 29/45 (64%)
PHD_4 721..801 CDD:293471 27/79 (34%)
F-box-like <1073..1108 CDD:289689 12/34 (35%)
leucine-rich repeat 1102..1125 CDD:275381 8/23 (35%)
leucine-rich repeat 1126..1149 CDD:275381 11/22 (50%)
leucine-rich repeat 1150..1173 CDD:275381 8/22 (36%)
AMN1 1166..>1320 CDD:187754 47/160 (29%)
leucine-rich repeat 1174..1213 CDD:275381 15/39 (38%)
leucine-rich repeat 1214..1238 CDD:275381 7/23 (30%)
leucine-rich repeat 1239..1267 CDD:275381 8/27 (30%)
leucine-rich repeat 1268..1292 CDD:275381 8/23 (35%)
leucine-rich repeat 1293..1317 CDD:275381 4/23 (17%)
fbxl19XP_031748792.1 zf-CXXC <35..71 CDD:366873 22/35 (63%)
PHD_FXL19 81..142 CDD:277115 23/74 (31%)
F-box-like 406..443 CDD:403981 12/36 (33%)
leucine-rich repeat 439..463 CDD:275381 8/23 (35%)
AMN1 444..644 CDD:187754 72/199 (36%)
leucine-rich repeat 464..487 CDD:275381 11/22 (50%)
leucine-rich repeat 512..552 CDD:275381 15/39 (38%)
leucine-rich repeat 553..577 CDD:275381 7/23 (30%)
leucine-rich repeat 578..606 CDD:275381 8/27 (30%)
leucine-rich repeat 607..631 CDD:275381 8/23 (35%)
leucine-rich repeat 632..651 CDD:275381 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 125 1.000 Domainoid score I5394
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D165446at33208
OrthoFinder 1 1.000 - - FOG0000253
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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