DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rel and Rela

DIOPT Version :10

Sequence 1:NP_477094.1 Gene:Rel / 41087 FlyBaseID:FBgn0014018 Length:971 Species:Drosophila melanogaster
Sequence 2:NP_954888.1 Gene:Rela / 309165 RGDID:727889 Length:550 Species:Rattus norvegicus


Alignment Length:509 Identity:145/509 - (28%)
Similarity:213/509 - (41%) Gaps:144/509 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 PQLRIVEQPVEK-FRFRYKSEMHGTHGSLNGANSKRTPKTFPEVTLCNYDGPAVIRCSLFQTN-L 212
            |.:.|:|||.:: .|||||.|.... ||:.|..|..|.||.|.:.:..|.||..:|.||...: .
  Rat    19 PYVEIIEQPKQRGMRFRYKCEGRSA-GSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPP 82

  Fly   213 DSPHSHQLVVRKDDRD------VCDPHDLHVSKERGYVAQFINMGIIHTAKKYIFEELCKKKQDR 271
            ..||.|:| |.||.||      :|....:|         .|.|:||           .|.||:|.
  Rat    83 HRPHPHEL-VGKDCRDGFYEAELCPDRCIH---------SFQNLGI-----------QCVKKRDL 126

  Fly   272 LVFQMNRRELSHKQLQELHQETEREAKDMNLNQVRLCFEAFKIEDNGAWVPLAPPVYSNAINNRK 336
            ......|.:.::...|   ...|.:..|.:||.|||||:....:.:|..:.|. ||.|:.|.:.:
  Rat   127 EQAISQRIQTNNNPFQ---VPIEEQRGDYDLNAVRLCFQVTVRDPSGRPLRLT-PVLSHPIFDNR 187

  Fly   337 SAQTGELRIVRLSKPTGGVMGNDELILLVEKVSKKNIKVRFFEEDEDGETVWEAYAKFRESDVHH 401
            :..|.||:|.|:::.:|..:|.||:.||.:||.|::|:|.|....      |||...|.::|||.
  Rat   188 APNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPG------WEARGSFSQADVHR 246

  Fly   402 QYAIVCQTPPYKDKDVDREVNVYIELIRPSDDERSFPALPFRYKPRS---VIVSRKRRRTGSS-- 461
            |.|||.:||||.|..:...|.|.::|.||||.|.|.| :.|:|.|.:   ..:..||:||..:  
  Rat   247 QVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEP-MEFQYLPDTDDRHRIEEKRKRTYETFK 310

  Fly   462 ---------------------------------------ANSSSSGT--------------ESSN 473
                                                   |.|:|..|              :.||
  Rat   311 SIMKKSPFNGPTEPRPPPRRIAVPSRGPTSVPKPAPQPYAFSTSLSTINFDEFSPMVLPPGQISN 375

  Fly   474 NSLDL-------------PKTL---GLAQPPNGLPNLS----------------QHDQTISEEFG 506
            .:|.|             |.:.   .|||||..:|.|:                ..:.|:||.. 
  Rat   376 QALALAPSSAPVLAQTMVPSSAMVPSLAQPPAPVPVLAPGPPQSLSAPVPKSTQAGEGTLSEAL- 439

  Fly   507 REKHLNEFIASEDFRKLIEHNS-----SDLEKICQLDMGELQHDG----HNRAE 551
              .|| :|.|.||...|:.:|:     :||..:...:..:|.:.|    |:.||
  Rat   440 --LHL-QFDADEDLGALLGNNTDPGVFTDLASVDNSEFQQLLNQGVAMSHSTAE 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RelNP_477094.1 RHD-n_Relish 150..336 CDD:143644 61/193 (32%)
IPT_NFkappaB 343..446 CDD:238582 43/102 (42%)
ANKYR 590..805 CDD:440430
ANK repeat 640..671 CDD:293786
ANK repeat 673..708 CDD:293786
RelaNP_954888.1 RHD-n_RelA 19..187 CDD:143645 61/193 (32%)
IPT_NFkappaB 194..290 CDD:238582 43/102 (42%)
Nuclear localization signal. /evidence=ECO:0000255 301..304 2/2 (100%)
Transcriptional activation domain 3. /evidence=ECO:0000250|UniProtKB:Q04207 342..388 8/45 (18%)
Transcriptional activation domain 1. /evidence=ECO:0000250|UniProtKB:Q04206 414..476 13/65 (20%)
Transcriptional activation domain 2. /evidence=ECO:0000250|UniProtKB:Q04207 520..550
9aaTAD. /evidence=ECO:0000255 535..543
Blue background indicates that the domain is not in the aligned region.

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