DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rel and nfkb1

DIOPT Version :9

Sequence 1:NP_477094.1 Gene:Rel / 41087 FlyBaseID:FBgn0014018 Length:971 Species:Drosophila melanogaster
Sequence 2:XP_002934805.3 Gene:nfkb1 / 100486083 XenbaseID:XB-GENE-985746 Length:955 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RelNP_477094.1 RHD-n_Relish 150..336 CDD:143644
IPT_NFkappaB 343..446 CDD:238582
ANK 638..766 CDD:238125
ANK repeat 640..671 CDD:293786
Ank_4 641..691 CDD:290365
ANK repeat 673..708 CDD:293786
Ank_2 678..775 CDD:289560
nfkb1XP_002934805.3 RHD-n 41..239 CDD:415490
IPT_NFkappaB 246..347 CDD:238582
Ank_2 509..593 CDD:403870
ANK repeat 523..560 CDD:293786
ANK repeat 564..593 CDD:293786
Ank_2 567..661 CDD:403870
ANK repeat 595..629 CDD:293786
ANK repeat 631..662 CDD:293786
Ank_2 636..725 CDD:403870
ANK repeat 665..697 CDD:293786
ANK repeat 699..730 CDD:293786
Death_NFkB1_p105 796..871 CDD:260063
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I3381
OMA 1 1.010 - - QHG47610
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 1 1.000 - - FOG0004970
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X100
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.080

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