DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rel and rel

DIOPT Version :9

Sequence 1:NP_477094.1 Gene:Rel / 41087 FlyBaseID:FBgn0014018 Length:971 Species:Drosophila melanogaster
Sequence 2:NP_001096177.1 Gene:rel / 100124724 XenbaseID:XB-GENE-993262 Length:567 Species:Xenopus tropicalis


Alignment Length:626 Identity:159/626 - (25%)
Similarity:257/626 - (41%) Gaps:123/626 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 PQLRIVEQPVEK-FRFRYKSEMHGTHGSLNGANSKRTPKTFPEVTLCNYDGPAVIRCSLFQTNLD 213
            |.:.|.|||.:: .|:|||.|.. ..||:.|..|....:|:|.:.:.||.|..::|.:|...|..
 Frog    20 PYIEIFEQPRQRGMRYRYKCEGR-CAGSILGETSTENNRTYPSIKIMNYTGKGILRITLVTKNEP 83

  Fly   214 -SPHSHQLVVRKDDRDVCDPHDLHVSKERGYVAQFINMGIIHTAKKYIFEELCKKKQDRLVFQMN 277
             .||.|.| |.||.||  ..::|....:| .|..|.|:||....:|.:.|.:    ..|::.:||
 Frog    84 YKPHPHDL-VGKDCRD--GYYELEFGSDR-TVLCFQNLGIQCVRRKEVREAI----HTRIMRKMN 140

  Fly   278 RRELSHKQLQELHQETEREAKDMNLNQVRLCFEAFKIEDNGAWVPLAPPVYSNAINNRKSAQTGE 342
            ...:...||..:        :|.:||.|||||:.|..:::|::....|||.||.|.:.::..|.|
 Frog   141 PFGVREDQLLTI--------EDYDLNVVRLCFQVFLPDEHGSYTRALPPVVSNPIYDNRAPNTAE 197

  Fly   343 LRIVRLSKPTGGVMGNDELILLVEKVSKKNIKVRFFEEDEDGETVWEAYAKFRESDVHHQYAIVC 407
            |||.|::|..|.|.|.||:.||.:||.|.:|:||||.::      |||...|.::|||.|.|||.
 Frog   198 LRICRVNKNCGSVNGGDEIFLLCDKVQKDDIEVRFFTDN------WEAKGTFGQADVHRQVAIVF 256

  Fly   408 QTPPYKDKDVDREVNVYIELIRPSDDERSFPALPFRYKPRSVIVSRKRRRTGSSANSSSSGTESS 472
            :|||: .:.:...|.|.::|.||||.|.|.| :.|||.|      ......|:......:.....
 Frog   257 KTPPF-HRSITDAVTVKMQLRRPSDQEVSEP-MDFRYLP------DPEDPHGNKFKKQKTSEVMQ 313

  Fly   473 NNSLDLPKTLGLAQPPNGLPNLSQHDQTISEEFGREKHLNEFI--------------ASEDFRKL 523
            ....::.....|..|..|:..:.:...|.|...|:     .|:              .:....::
 Frog   314 KFKFEMQDRRDLNPPTFGVNPIKREHFTNSSGCGQ-----RFLPMLPTKPACATYNNTTSPQSRV 373

  Fly   524 IEHNSSDLEKICQLD-MGELQHDGHNRAEVPSHRNRTIKCLDDLFEIYKQDRISPIKISHHKVEK 587
            .:.||:....:.||. :.....|.       .|...|:..::.|       |.:|.:.:.||:. 
 Frog   374 PKFNSNIQPSLSQLPVLNSAMQDN-------MHSTSTMNIMETL-------RTAPSQPNTHKLP- 423

  Fly   588 WFIEHALNNYNRDTLLHEVISHKKDKLKLAIQTIQVMNYFNLKDVVNSTLNADGDSALHVACQQD 652
                     |...|       |.:.::..:..|.....:||.          :..|...|.|:.|
 Frog   424 ---------YTEPT-------HPRPEVATSNTTSMFRPFFNY----------NVPSCPSVPCEID 462

  Fly   653 RAHYIRPLLGMGCNP-NLKNNAGNTPLHVAVKEEHLSCVESFLNGVPTVQL------------DL 704
            .  |..|...|..:. ....:|.|.|           .:.|..|||..:.:            :.
 Frog   463 L--YKAPSNHMDISDIGQLTSAVNAP-----------SISSLCNGVQPINIYSTQFSYHHAMSES 514

  Fly   705 SLTNDDGLTPLHMAIRQNKYDVAKKLISYDRTSISVANTMD 745
            .|.:..|..|...::   .:::...::..|...|||.:.:|
 Frog   515 RLPDTSGAPPHSTSM---GHEIFSDIVQSDDNYISVESELD 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RelNP_477094.1 RHD-n_Relish 150..336 CDD:143644 61/187 (33%)
IPT_NFkappaB 343..446 CDD:238582 47/102 (46%)
ANK 638..766 CDD:238125 22/121 (18%)
ANK repeat 640..671 CDD:293786 7/31 (23%)
Ank_4 641..691 CDD:290365 10/50 (20%)
ANK repeat 673..708 CDD:293786 8/46 (17%)
Ank_2 678..775 CDD:289560 12/80 (15%)
relNP_001096177.1 RHD-n 20..191 CDD:298664 61/187 (33%)
RHD_dimer 199..294 CDD:292797 47/108 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D391433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24169
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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