DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tgo and NPAS2

DIOPT Version :9

Sequence 1:NP_001262397.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster
Sequence 2:XP_005264010.1 Gene:NPAS2 / 4862 HGNCID:7895 Length:889 Species:Homo sapiens


Alignment Length:841 Identity:186/841 - (22%)
Similarity:285/841 - (33%) Gaps:260/841 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDEANIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVA---- 61
            |||   .:|:| |.|.:..:.|::||::....|.|||.|:|   ...||.||.|:|...:.    
Human    66 MDE---DEKDR-AKRASRNKSEKKRRDQFNVLIKELSSMLP---GNTRKMDKTTVLEKVIGFLQK 123

  Fly    62 HMKALRGTGNTSSDGTYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQS 126
            |.:....|........:|||||:::|...|:|||.|||:..|:.| |.:||||||:||:|.:..|
Human   124 HNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTD-GSIIYVSDSITPLLGHLPS 187

  Fly   127 DWYGTSLYEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQSSMRLSMGARRGFICRM 191
            |....:|...:...:..::.:.||:..         |.:.:...|..:|...|.      |.|.:
Human   188 DVMDQNLLNFLPEQEHSEVYKILSSHM---------LVTDSPSPEYLKSDSDLE------FYCHL 237

  Fly   192 RVGNVNPESMVSGHLNRLKQRNSLGPSRDGTNYAVVHCTGYIKNWPPTDMFPNMHMERDVDDMSS 256
            ..|::||:...:....:.     :|..|...|.....|.|:..........|          :..
Human   238 LRGSLNPKEFPTYEYIKF-----VGNFRSYNNVPSPSCNGFDNTLSRPCRVP----------LGK 287

  Fly   257 HCCLVAIGRLQVTSTAANDMSGSNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDF 321
            ..|.:|..||.................||.:||:::.||.|:|.|...|:||.|.|:||...||:
Human   288 EVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDY 352

  Fly   322 FHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNS-- 384
            :|.:|...:... .|.|.|.|:..|..||...|..:::||:|..|...:.:..:.|:||||:|  
Human   353 YHIDDLELLARC-HQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVV 416

  Fly   385 ------------------------------SGKTM----HGAPLDAAA-----AHTPEQVQQQQQ 410
                                          .|.::    |...||..|     :|:|....:...
Human   417 SYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHFNTLDVGASGLNTSHSPSASSRSSH 481

  Fly   411 QEQHVYVQ----------------------------AAPGVDYARRELTPVGS------------ 435
            :..|..:.                            ..||:..|.....|:.|            
Human   482 KSSHTAMSEPTSTPTKLMAEASTPALPRSATLPQELPVPGLSQAATMPAPLPSPSSCDLTQQLLP 546

  Fly   436 --------------ATNDGMYQT-----------------------H--------------MLAM 449
                          :....|:||                       |              .:.:
Human   547 QTVLQSTPAPMAQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFL 611

  Fly   450 QAPT----------PQQQQQQQQR---------------PG---SAQTTPVGYTYDTTHSPYSAG 486
            |.|.          |:.|||.|||               ||   |||.|......::  |..|..
Human   612 QQPAVSLSFSSTQRPEAQQQLQQRSAAVTQPQLGAGPQLPGQISSAQVTSQHLLRES--SVISTQ 674

  Fly   487 GPSPLAKIP------KSGTSPTPVAPNSWAALRPQQQQQQQQPVTEGYQYQQTSPARSPSGPTYT 545
            ||.|:....      :||:|......::.|||.|              ....|:||.:....:..
Human   675 GPKPMRSSQLMQSSGRSGSSLVSPFSSATAALPP--------------SLNLTTPASTSQDASQC 725

  Fly   546 QLSAGNGNRQQAQ-----------PGAYQAGPPPPPNAPG--------MWDWQQAGGHP----HP 587
            |.|....:.:|.:           ||:..|..|...:..|        ...:|....||    ..
Human   726 QPSPDFSHDRQLRLLLSQPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPANSSSA 790

  Fly   588 PHP-------TAHPHHPHAHPG--GPAGAGQPQGQEFSDMLQMLDHTPTTFEDLNINMFST 639
            |.|       ..||..|.:.|.  .||.|.|...|.:   ||:...|....|..:..:.||
Human   791 PMPVLLMGQAVLHPSFPASQPSPLQPAQARQQPPQHY---LQVQAPTSLHSEQQDSLLLST 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tgoNP_001262397.1 HLH 15..67 CDD:278439 17/55 (31%)
PAS 87..192 CDD:279347 31/104 (30%)
PAS 90..154 CDD:214512 24/63 (38%)
PAS_11 283..384 CDD:291273 37/100 (37%)
PAS 283..380 CDD:238075 33/96 (34%)
NPAS2XP_005264010.1 HLH 72..126 CDD:238036 19/57 (33%)
PAS 149..214 CDD:214512 25/65 (38%)
PAS_9 159..260 CDD:290162 30/121 (25%)
PAS_11 314..417 CDD:291273 38/103 (37%)
PAS 315..415 CDD:238075 37/100 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144511
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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