DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tgo and clockb

DIOPT Version :9

Sequence 1:NP_001262397.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_840080.2 Gene:clockb / 352927 ZFINID:ZDB-GENE-030408-2 Length:820 Species:Danio rerio


Alignment Length:692 Identity:161/692 - (23%)
Similarity:252/692 - (36%) Gaps:204/692 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DEANI------QDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAV 60
            |:.:|      :|::..|.|.:..:.|::||::....|.||..|:|   ...||.||.|||:.::
Zfish     7 DDGSIFDGLMEEDEKDKAKRVSRNKSEKKRRDQFNVLIKELGTMLP---GNTRKMDKSTILQKSI 68

  Fly    61 AHMKALR--GTGNTSSD--GTYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVL 121
            .:::..:  ...:.|||  ..:||.||:::|...|:|||.||| |:|....|.:||:|:|||.:|
Zfish    69 DYLRKNKENAAQSESSDIKQDWKPPFLSNEEFSQLMLEALDGF-FLVMLTDGYIIYISESVTSLL 132

  Fly   122 NYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQSSMRLSMGARRG 186
            .:..||....:|...:...|..::.:.||:|..     |.:|.|..:|.:....           
Zfish   133 EHLPSDLMDQNLLNFLPVVDHGEVYKALSSQPD-----IENLNSDYLKSKNQME----------- 181

  Fly   187 FICRMRVGNVNPES-------MVSGHLNRL-----KQRNSLGPSRDGTNYAVVHCTGYIKNWPPT 239
            |.|.|..|:|:|:.       ...|:...|     |.||.|              .|.:::    
Zfish   182 FCCHMLRGSVDPKKPPVYEYVKFIGNFKSLVNMPQKTRNGL--------------EGILQH---- 228

  Fly   240 DMFPNMHMERDVDDMSSHCCLVAIGRLQVTSTAANDMSGSNNQSEFITRHAMDGKFTFVDQRVLN 304
                  .::...||   ..|.:|..||.................||.:||:::.||..:|.|...
Zfish   229 ------SLQPAFDD---QLCFIATVRLAKPQFIKEMCMVEEPNEEFTSRHSLEWKFLLLDHRAPP 284

  Fly   305 ILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFL 369
            |:||.|.|:||...||::|.:| .|......:.|.|.|:..|..||...|..:::||:|..|...
Zfish   285 IIGYMPFEVLGTSGYDYYHVDD-LHSLAKCHEHLMQFGKGKSCYYRFLTKGQQWIWLQTNYYITY 348

  Fly   370 NPYTDEVEYIVCTN--------------------------------------------------- 383
            :.:....|:||||:                                                   
Zfish   349 HQWNSRPEFIVCTHTVVSYAEVRAERRREMGIEESPPELTADKISGSETQLNNSLKKVLERFSDS 413

  Fly   384 --------SSGKTMHGAPLDAAAAHTPEQVQQQQQQEQHVYVQAAP---GVDY--ARRELTPVGS 435
                    ||.|:.|.|..|.....||.::        |:.|.::|   .||.  .||......|
Zfish   414 RSPSTSSRSSHKSSHTAISDNTCTSTPSKL--------HMDVSSSPRPATVDMISQRRSSVSTQS 470

  Fly   436 ATNDGMYQTHMLAMQAPTPQQQQQQQQRPG--------SAQTTPVGYTYD--------------- 477
            .::....||......:...|.||||.|:|.        |||...:.:..:               
Zfish   471 MSSQNTTQTDSPVQISQQTQHQQQQPQQPQQVQPNALFSAQLNAMQHLKEQLEQRTRMIEANIQK 535

  Fly   478 --------------------TTHSPYSAGGPSPLAKIPK----------SGTSPTPVA------- 505
                                ....|...||||.|  :|:          .||..:.||       
Zfish   536 QQEELRQIHEQLQRVQGPQMILQQPAQGGGPSVL--LPQVGGAQNNILGIGTQASVVAIQGQNVT 598

  Fly   506 PNSWAALRPQQQQQQQQPVTEGYQYQQTSPARSPSGPTYTQL 547
            ..:.:...||||...||......|....|.:.:..||.|..:
Zfish   599 STAHSGSAPQQQTLPQQQTPRSLQQNLQSSSVTQCGPVYNTM 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tgoNP_001262397.1 HLH 15..67 CDD:278439 16/51 (31%)
PAS 87..192 CDD:279347 31/104 (30%)
PAS 90..154 CDD:214512 24/63 (38%)
PAS_11 283..384 CDD:291273 36/159 (23%)
PAS 283..380 CDD:238075 32/96 (33%)
clockbNP_840080.2 HLH 22..76 CDD:238036 17/56 (30%)
PAS 99..160 CDD:214512 22/61 (36%)
PAS_11 263..366 CDD:291273 36/103 (35%)
PAS 264..362 CDD:238075 35/98 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577640
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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