DRSC/TRiP Functional Genomics Resources

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Protein Alignment tgo and Ncoa1

DIOPT Version :10

Sequence 1:NP_731308.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster
Sequence 2:XP_017449617.1 Gene:Ncoa1 / 313929 RGDID:1309046 Length:1443 Species:Rattus norvegicus


Alignment Length:618 Identity:136/618 - (22%)
Similarity:219/618 - (35%) Gaps:159/618 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DEANIQDKERFASRENHCE-----IERRRRNKMTAYITELSDM----VPTCSALARKPDKLTILR 57
            |.||....:|   :.:.|:     .|:|||.:...|:.||:::    :....:|:.||||..||:
  Rat    10 DPANPDSHKR---KGSPCDTLASSTEKRRREQENKYLEELAELLSANISDIDSLSVKPDKCKILK 71

  Fly    58 MAVAH---MKALRGTGNTSSDGTYKPSF-------LTDQELKHLILEAADGFLFVVSCDSGRVIY 112
            ..|..   ||.:....:|:.|...|...       :..:.|..|:|||.|||.|||:|: ||:::
  Rat    72 KTVDQIQLMKRMEQEKSTTDDDVQKSDISSSSQGVIEKESLGPLLLEALDGFFFVVNCE-GRIVF 135

  Fly   113 VSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQSSM 177
            ||::||..|.|.|.:...||:|..:|..|..:..:.|..:...|.   :.......::..|.   
  Rat   136 VSENVTSYLGYNQEELMNTSVYSILHVGDHAEFVKNLLPKSLVNG---VPWPQEATRRNSHT--- 194

  Fly   178 RLSMGARRGFICRMRVGNVNPESMVSGHLNRLKQRNSLGPSRDGT-------NYAVVHCTGYIKN 235
                     |.|||.   ::|                  |...||       .|.|:.|  :..:
  Rat   195 ---------FNCRML---IHP------------------PDEPGTENQEACQRYEVMQC--FTVS 227

  Fly   236 WPPTDMFPNMHMERDVDDMSSHCCLVAIGRLQVTSTAANDMSGSNNQSEFITRHAMDGKFTFVDQ 300
            .|.:       ::.|.:|..|  ||:.|.|......|...:      ..|:|:....||...:|.
  Rat   228 QPKS-------IQEDGEDFQS--CLICIARRLPRPPAITGV------ESFMTKQDTTGKIISIDT 277

  Fly   301 RVLNILGYTPTE-LLGKICYDFFHPE--DQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLR 362
            ..|...|.|..| |:.|..|.||.|:  :.|:.::.|.:|:.          |..|.:..|.:: 
  Rat   278 SSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMT----------RGTASSPSYRFI- 331

  Fly   363 TQAYAFLNPYTDEVEYIVCTNSSGKTMHGAPLDAAAAHTPEQVQQQQQQEQHVYVQAAPGVDYAR 427
                  ||..|                      ..:|||..::...|..:...::.....:|...
  Rat   332 ------LNDGT----------------------MLSAHTKCKLCYPQSPDMQPFIMGIHIIDREH 368

  Fly   428 RELTP------------VGSATNDGMYQTHMLAMQAPTPQQQQQQ-QQRPGSAQTTPVGYTYDTT 479
            ..|:|            :..:.|.|:...|.:...:..|...... ..|....|:|.:......:
  Rat   369 SGLSPQDDTNSGMSIPRINPSVNPGISPAHGVTRSSTLPPSNNNMVSARANRQQSTDLNSGSSHS 433

  Fly   480 HSPYSAGGPSPLAKIPKSGTSPTPVAPNSWAALRPQQQQQQQQPVTEGYQYQQTSPARSPSGPTY 544
            :|..|.|         ..|.||......|.|..:.|...|...|        ..:...||...|.
  Rat   434 NSSSSQG---------SFGCSPGNQIVASVALSQGQAGSQSSNP--------SLNLNNSPMEGTG 481

  Fly   545 TQLSAGNGNRQQAQPG----AYQAGPPPPPNAP 573
            ..|:.....|:||..|    |..:....|||.|
  Rat   482 ISLAQFMSPRRQANSGLATRARMSNNSFPPNIP 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tgoNP_731308.1 bHLH-PAS_ARNT 9..74 CDD:381517 20/76 (26%)
PAS 90..154 CDD:214512 26/63 (41%)
PAS_11 282..384 CDD:464214 24/104 (23%)
Ncoa1XP_017449617.1 bHLH-PAS_NCoA1_SRC1 27..87 CDD:381518 17/59 (29%)
PAS 120..213 CDD:238075 32/129 (25%)
PAS_11 259..370 CDD:464214 29/155 (19%)
NCOA_u2 469..591 CDD:465223 13/46 (28%)
SRC-1 630..709 CDD:462615
DUF4927 744..821 CDD:465083
Nuc_rec_co-act 927..972 CDD:462608
Med15 <977..>1289 CDD:312941
DUF1518 1152..1208 CDD:462174
DUF1518 1215..1270 CDD:462174
Blue background indicates that the domain is not in the aligned region.

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