DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tgo and Arntl

DIOPT Version :9

Sequence 1:NP_001262397.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster
Sequence 2:XP_017444554.1 Gene:Arntl / 29657 RGDID:62003 Length:633 Species:Rattus norvegicus


Alignment Length:540 Identity:202/540 - (37%)
Similarity:296/540 - (54%) Gaps:61/540 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRGTGNTSSDGTY 78
            :||.|.:||:|||:||.::|.||:.:||||:|::||.||||:|||||.|||.|||..|..::..|
  Rat    80 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANY 144

  Fly    79 KPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDRE 143
            ||:||:|.|||||||.|||||||||.||.|::::||:||..:|||:|:|..|.||::::||.|..
  Rat   145 KPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIA 209

  Fly   144 KIREQLSTQESQNAGRILDLKSG-TVKKEGHQSSMRLSMGARRGFICRMRVG----NVNPESMVS 203
            |::||||:.::....|::|.|:| .||.:......||..||||.|.|||:..    .|..:...|
  Rat   210 KVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFAS 274

  Fly   204 GHLNRLKQRNSLGPSRDGTNYAVVHCTGYIKNWPPTDMFPNMHMERDVDDMSSHC---CLVAIGR 265
            ....:...|.|         :..:|.|||:|:||||    .|.::.|.:..:..|   |||||||
  Rat   275 TCSKKKADRKS---------FCTIHSTGYLKSWPPT----KMGLDEDSEPDNEGCNLSCLVAIGR 326

  Fly   266 LQVTSTAANDMSGS--NNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQS 328
            |. :......::|.  ....|:::|||:||||.|||||...||.|.|.||||..||::||.:|..
  Rat   327 LH-SHMVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIG 390

  Fly   329 HMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNS--SGKTMHG 391
            |:.|...|||:.:.::.:..|:.:.|:..::.||::.::|:||:|.||||||.||:  ....:.|
  Rat   391 HLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEG 455

  Fly   392 A----PLDAAAAHTPEQVQQQQQ---QEQHVYVQAAPGVDYARRELTPVGSATNDGMYQTHMLAM 449
            .    |...|:.|:.:.:....:   :..|..|...||  ..|.....:|....:.:.:.|.:  
  Rat   456 GDPTFPQLTASPHSMDSMLPSGEGGPKRTHPTVPGIPG--GTRAGAGKIGRMIAEEIMEIHRI-- 516

  Fly   450 QAPTPQQQQQQQQRPGSAQTTPVGYTYDTTHSPYSAGGPSPLAKIPKSGTSPTPVAPNSWAALRP 514
                      :...|.|..::|:..|........|.||    .||...||...|.     |.|.|
  Rat   517 ----------RGSSPSSCGSSPLNITSTPPPDASSPGG----KKILNGGTPDIPS-----AGLLP 562

  Fly   515 QQQQQQQQPVTEGYQYQQTS 534
            .|.|:     |.||.|..:|
  Rat   563 GQAQE-----TPGYPYSDSS 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tgoNP_001262397.1 HLH 15..67 CDD:278439 32/51 (63%)
PAS 87..192 CDD:279347 54/105 (51%)
PAS 90..154 CDD:214512 36/63 (57%)
PAS_11 283..384 CDD:291273 46/100 (46%)
PAS 283..380 CDD:238075 43/96 (45%)
ArntlXP_017444554.1 bHLH-PAS_ARNTL_PASD3 74..137 CDD:381444 35/56 (63%)
PAS 156..215 CDD:214512 33/58 (57%)
PAS_11 346..448 CDD:405306 47/101 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338217
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D168098at33208
OrthoFinder 1 1.000 - - FOG0000695
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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