DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tgo and PASD1

DIOPT Version :9

Sequence 1:NP_001262397.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_775764.2 Gene:PASD1 / 139135 HGNCID:20686 Length:773 Species:Homo sapiens


Alignment Length:560 Identity:100/560 - (17%)
Similarity:177/560 - (31%) Gaps:204/560 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 PSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREK 144
            |||.|......:.|:..|||:..:|.| |.:|.|:::::.:|.:..::..|..|...:..:::::
Human    25 PSFPTYDYFNQVTLQLLDGFMITLSTD-GVIICVAENISSLLGHLPAEIVGKKLLSLLPDEEKDE 88

  Fly   145 IREQLSTQESQNAGRILDLKSGTVKKEGHQSSMRLSMGARRGFICRMRVGNVNPESMVSGHLNRL 209
            :.:::.            ||...:..|.|..           |.|.::.|||.     .|..:..
Human    89 VYQKII------------LKFPLLNSETHIE-----------FCCHLKRGNVE-----HGDSSAY 125

  Fly   210 KQRNSLGPSRDGTNYAVVHCTGYIKNWPPTDMFPNMHMERDVDDMSSHCCLVAIGRLQVTSTAAN 274
            :....:...||..|...|..:|.                     .|||.|.              
Human   126 ENVKFIVNVRDICNEFPVVFSGL---------------------FSSHLCA-------------- 155

  Fly   275 DMSGSNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLK 339
            |.:....|.:.:                         .|:|.:|                  :|:
Human   156 DFAACVPQEDRL-------------------------YLVGNVC------------------ILR 177

  Fly   340 QKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYI-VCTNSSGKTMH---------GAPL 394
            .  |:...||.::|.:.|         |.|...:||..:: ..::|.|:..|         .|..
Human   178 T--QLLQQLYTSKAVSDE---------AVLTQDSDEEPFVGELSSSQGQRGHTSMKAVYVEPAAA 231

  Fly   395 DAAAAHTPEQV------QQQQQQEQHVYVQA----------------APGV---DY-ARRELTPV 433
            .||||.:.:|:      |...|:..|::|.:                :|.:   |: ...|:.| 
Human   232 AAAAAISDDQIDIAEVEQYGPQENVHMFVDSDSTYCSSTVFLDTMPESPALSLQDFRGEPEVNP- 295

  Fly   434 GSATNDGMYQTHMLAMQAPTPQQQQQQQQRPGSAQ--TTPVGYTYDTTHSPYSAGG------PSP 490
                   :|:...:.::....|.....|:.|...|  ..||        :|....|      |..
Human   296 -------LYRADPVDLEFSVDQVDSVDQEGPMDQQDPENPV--------APLDQAGLMDPVDPED 345

  Fly   491 LAKIPKSGTSPTPVAPNSWAA-------------LRPQQQQ---------QQQQPVTE---GYQY 530
            ...:..:|.|..|:.|:|..|             |:.|.::         |.||...|   .:..
Human   346 SVDLGAAGASAQPLQPSSPVAYDIISQELELMKKLKEQLEERTWLLHDAIQNQQNALELMMDHLQ 410

  Fly   531 QQTSPARSPSGPTYTQLSAGNGNRQQAQPGAYQAGPPPPP 570
            :|.:..|....|. .|.|.....:||.|.......|.|.|
Human   411 KQPNTLRHVVIPD-LQSSEAVPKKQQKQHAGQVKRPLPHP 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tgoNP_001262397.1 HLH 15..67 CDD:278439
PAS 87..192 CDD:279347 18/104 (17%)
PAS 90..154 CDD:214512 12/63 (19%)
PAS_11 283..384 CDD:291273 13/101 (13%)
PAS 283..380 CDD:238075 13/97 (13%)
PASD1NP_775764.2 PAS 41..137 CDD:238075 22/124 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..361 11/55 (20%)
Necessary for transcriptional repression. /evidence=ECO:0000269|PubMed:25936801 365..412 7/46 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 427..448 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 506..569
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 732..773
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144508
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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