DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tgo and arntl2

DIOPT Version :9

Sequence 1:NP_001262397.1 Gene:tgo / 41084 FlyBaseID:FBgn0264075 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_001096298.1 Gene:arntl2 / 100124875 XenbaseID:XB-GENE-6454872 Length:594 Species:Xenopus tropicalis


Alignment Length:505 Identity:180/505 - (35%)
Similarity:275/505 - (54%) Gaps:42/505 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ANIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG 68
            :::.|.:   .||.|.|.|:|||.||...|..||.|:|....|..||||||:|||||.|:|:|:|
 Frog    66 SDVNDTQ---GREAHRETEKRRREKMNNLIENLSAMIPQSGPLPSKPDKLTVLRMAVQHLKSLKG 127

  Fly    69 TGNTSSDGTYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSL 133
            :..:.:|.:.|||||..:|:|.|||.||||||||:.||.|.:::||:|||..|.|.|.|..|.||
 Frog   128 SNPSFADESPKPSFLKHEEMKQLILRAADGFLFVIGCDRGEILFVSESVTKTLKYNQGDLMGKSL 192

  Fly   134 YEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQSSMRLSMGARRGFICRMRVGNVNP 198
            ::.:||.|..|::||||:.:.....:::|.|:| ::...|..:.||..|:||.|.|||:      
 Frog   193 FDFLHPKDVAKVKEQLSSSDIAPREKLIDAKTG-LQVHTHFQASRLHWGSRRSFFCRMK------ 250

  Fly   199 ESMVSGHLNRLKQRNSLGPS--RDGTNYAVVHCTGYIKNWPPTDMFPNMHMERDVD-DMSSHCCL 260
                ||..|..::::.|..|  :|...|..:|||||:::.||::      .|.|.| :..:..||
 Frog   251 ----SGRANHKEEKDFLRNSKRKDHRRYCTIHCTGYLRSCPPSE------EECDTDREAPNSRCL 305

  Fly   261 VAIGRLQVTSTAANDMSGSNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPE 325
            ||||||....|..|........:||:||:.|||||.:||||...||||.|.||||..||::||.:
 Frog   306 VAIGRLHPYITPQNSSEVKVKPTEFVTRYTMDGKFVYVDQRATAILGYLPQELLGTSCYEYFHID 370

  Fly   326 DQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKTMH 390
            |..|:.:....||:...::.:..|:.|.|:..::.|::|.:.|:||:|.::||||..|:......
 Frog   371 DYGHLTDRHKAVLQSSEKVETNCYKFRVKDGSFITLQSQWFGFINPWTKDLEYIVSVNTVVPNHS 435

  Fly   391 GAPLDAAAAHTPEQVQQQQQQEQHVYVQAAPGVDYARRELTPVGSATNDGMYQTHMLAMQAPTPQ 455
            .:..|.::  .|......|...:|..:. .||:.   .|:. :|:|.........::::      
 Frog   436 SSSEDTSS--LPGSSHSSQDNAKHPILN-IPGMS---SEIL-LGAANIGTQIVKEVMSL------ 487

  Fly   456 QQQQQQQRPGSAQTTPVGYTYDTTHSPYSAGGPSPLAKIPKSGT-SPTPV 504
              |:....|.:...:|.|   ....||.:...||..|:..:..| |||.:
 Frog   488 --QRSNSSPLNGDVSPSG---TPIKSPPALTVPSTTAQKGELVTLSPTEI 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tgoNP_001262397.1 HLH 15..67 CDD:278439 29/51 (57%)
PAS 87..192 CDD:279347 48/104 (46%)
PAS 90..154 CDD:214512 34/63 (54%)
PAS_11 283..384 CDD:291273 43/100 (43%)
PAS 283..380 CDD:238075 41/96 (43%)
arntl2NP_001096298.1 bHLH_SF 73..132 CDD:381792 31/58 (53%)
PAS 155..243 CDD:238075 37/88 (42%)
PAS_11 329..434 CDD:373151 44/104 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D168098at33208
OrthoFinder 1 1.000 - - FOG0000695
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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