DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kcmf1 and stmn1a

DIOPT Version :9

Sequence 1:NP_001163560.1 Gene:Kcmf1 / 41082 FlyBaseID:FBgn0037655 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_001035465.1 Gene:stmn1a / 678630 ZFINID:ZDB-GENE-031006-14 Length:148 Species:Danio rerio


Alignment Length:92 Identity:17/92 - (18%)
Similarity:44/92 - (47%) Gaps:22/92 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 DESLAKSDNVNKGQQQQQEDAEAEAQAETLLNNNADVEQQQQQQQLQPAM----------VRQVN 484
            |.||.:.....:..:::::..|||     :|.:.|: :::.:::.||.|:          ..::|
Zfish    45 DLSLVEIQKKLEAAEERRKSHEAE-----VLKHLAE-KREHEKEVLQKALEENNNFSKMAEEKLN 103

  Fly   485 QMQQTSPEDFVC------DEYRYKNKK 505
            |..:.:.|:...      ::::.|:||
Zfish   104 QKMEANKENRTAIMAAMNEKFKEKDKK 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcmf1NP_001163560.1 ZZ_PCMF_like 7..55 CDD:239078
zf-Di19 76..137 CDD:310299
stmn1aNP_001035465.1 Stathmin 6..141 CDD:307125 17/92 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1280
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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