DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kcmf1 and Dyb

DIOPT Version :9

Sequence 1:NP_001163560.1 Gene:Kcmf1 / 41082 FlyBaseID:FBgn0037655 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_001097287.1 Gene:Dyb / 36362 FlyBaseID:FBgn0033739 Length:816 Species:Drosophila melanogaster


Alignment Length:623 Identity:126/623 - (20%)
Similarity:200/623 - (32%) Gaps:205/623 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CDSCLKSNFNGRRYKCLICYDYDLCADCYEDGVTSTRHLVEHPMQCILTRSDIELYFGGEMLAS- 72
            |..|.|.||.|.||:|..|:.|.||.:|:..|.||..|..:|.::...:........|..:..| 
  Fly   234 CSVCHKENFTGFRYRCQRCHAYQLCQECFWHGKTSLNHQNDHEVKEYSSYKSPSKQIGHSLRKSF 298

  Fly    73 ---------------DQPQSF--------TCPYCKKMGFSDATLLEH--------VSAEH----- 101
                           |||:..        ..|.....||||.:.|.|        :..:|     
  Fly   299 RCVPEKTVQVLPRFPDQPEKTLNLSHIVPPSPLPSHNGFSDPSGLVHGHHGPHPGLPGQHGLFDR 363

  Fly   102 --------TETSLE--------VVCPVCAGLPGGEPNLVTDDFAGHLTLEHR------------- 137
                    |..||:        .:..|.|.....|.:.:...:|..|..|:|             
  Fly   364 SSTLDSRATGRSLDSASGTAGTTMSRVAAASANDEEHRLIARYAARLAQENRAPSNLPDNATPIG 428

  Fly   138 ----QGPRELISFLDEPS--AIRHGGGVRRIPGRTLGGP------------RTRRSNMHFSSSSG 184
                :..||||:.|:..:  .:|....:||........|            |.|:..:    ...
  Fly   429 TDNSRAQRELIAQLESKNKEIMREIARLRRQQETEQMAPENPALINELRALRQRKGEL----EGH 489

  Fly   185 LSALSPSGRESVDPIAELLSQLSGVRRGGP--------------------------PTSQLQQLQ 223
            |.||..|.|:.::.:..|:..|...:...|                          |.|.|...|
  Fly   490 LGALQDSRRQLMEQLEGLMRMLKNQQTASPRSTPNSSPRSGKSPPMPGGAGILGTSPMSALHAQQ 554

  Fly   224 MQMQLDRQQVTASRQ--IDRLPRRAHPIVSTSNSNAAMAEVISGGAGGSGGSGAVGSGSGGGSGA 286
            ||.......|.||:|  :.:..::||.....|.|.......||...          ..:...:|:
  Fly   555 MQQHPMAGGVRASQQQLLQQQQQQAHGHGPFSQSQLEQLNQISSDM----------RSAFAANGS 609

  Fly   287 TAPPNLRTTEWPVTASFSTSA---SNHSQTQSSLAANSLNAREAIGTSSSAGSNVLGISVGVGGT 348
            ..||.:|||    ||:.:.||   .|....|:..........||....:||.|:::         
  Fly   610 ATPPPMRTT----TATANVSAIPSLNPISNQNPNLNPDAELNEAADHLTSAISHMV--------- 661

  Fly   349 ANGNGGAGSSGVATGAGGAGQGGGQGGAAAGESFLLAQFMQPTFTEAEWAVVESMRADRSMFVQS 413
                     |.:..|.|.|.|.|.|..::..:    |:|:.|    .|:..:|...::       
  Fly   662 ---------SDLNAGRGRAQQLGPQPASSIPQ----ARFIMP----LEFRHIEGGESE------- 702

  Fly   414 LMLSMLCTEALDLNASDESLAKSDNVNKGQQQQ----QEDAEAEAQAETLLN-----NNADVEQQ 469
                            |.|..:.::...|:.::    .||.|.|..|....|     ..:.|.::
  Fly   703 ----------------DSSQCECNDCECGEYEEVFRTDEDLECEGAAAPFGNAYSLFPTSGVHEE 751

  Fly   470 Q-------QQQQLQPAMVRQVNQM--QQTSPEDFVCDE 498
            .       |.::|.     |||::  .:..||.|:.||
  Fly   752 DHFDYTFGQGEELS-----QVNRILGYRNHPELFIDDE 784

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcmf1NP_001163560.1 ZZ_PCMF_like 7..55 CDD:239078 19/45 (42%)
zf-Di19 76..137 CDD:310299 17/97 (18%)
DybNP_001097287.1 EF-hand_2 7..131 CDD:286194
EF-hand_3 135..223 CDD:286195
ZZ_dystrophin 232..280 CDD:239074 19/45 (42%)
Ribosomal_L29 436..482 CDD:279204 10/45 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12268
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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