DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kcmf1 and kcmf1

DIOPT Version :9

Sequence 1:NP_001163560.1 Gene:Kcmf1 / 41082 FlyBaseID:FBgn0037655 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_001116279.1 Gene:kcmf1 / 100126067 XenbaseID:XB-GENE-1021676 Length:381 Species:Xenopus tropicalis


Alignment Length:483 Identity:218/483 - (45%)
Similarity:267/483 - (55%) Gaps:147/483 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRHEGVSCDSCLKSNFNGRRYKCLICYDYDLCADCYEDGVTSTRHLVEHPMQCILTRSDIELYF 65
            ||||||||||:|||.||.||||||||||||||||.|||.|.|:|||..:|||||||||.|.:||:
 Frog     1 MSRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVDFDLYY 65

  Fly    66 GGEMLASDQPQSFTCPYCKKMGFSDATLLEHVSAEHTETSLEVVCPVCAGLPGGEPNLVTDDFAG 130
            |||..:.:||||||||||.|||:::.:|.|||::||.|||.||:||:||.||||:||.||||||.
 Frog    66 GGEAFSVEQPQSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAA 130

  Fly   131 HLTLEHRQGPRELISFLDEPSAIRHGGGVRRI--PGRTLGGPRTRRSNMHFSSSS--GL----SA 187
            ||||||| .||:    |||.|.:||   |||:  |||.|||||.||:||||:|||  ||    |:
 Frog   131 HLTLEHR-APRD----LDESSGVRH---VRRMFHPGRGLGGPRARRTNMHFTSSSTGGLSSSQSS 187

  Fly   188 LSPSGRESVDPIAELLSQLSGVRR--------GGPPTSQLQQLQMQMQLDRQQVTASRQIDRLPR 244
            .|||.||::|||||||||||||||        .||..|||||||||:||:|||..|:||.....|
 Frog   188 YSPSNREAMDPIAELLSQLSGVRRSTGGQLNSSGPSASQLQQLQMQLQLERQQAQAARQQLETAR 252

  Fly   245 RAHPIVSTSNSNAAMAEVISGGAGGSGGSGAVGSGSGGGSGATAPPNLRTTEWPVTASFSTSASN 309
            .|     |..:||:                                |:.||   :|.  ||:|:|
 Frog   253 NA-----TRRNNAS--------------------------------NVTTT---ITQ--STAATN 275

  Fly   310 HSQTQSSLAANSLNAREAIGTSSSAGSNVLGISVGVGGTANGNGGAGSSGVATGAGGAGQGGGQG 374
            .|.|:        |.:::|..|                                           
 Frog   276 TSSTE--------NNQQSIQNS------------------------------------------- 289

  Fly   375 GAAAGESFLLAQFMQPTFTEAEWAVVESMRADRSMFVQSLMLSML-------------------- 419
                  .|||.:...|..||||...:||.|||||:|||.|:||.|                    
 Frog   290 ------QFLLTRLNDPKMTEAERQSIESERADRSLFVQELLLSTLMQEESSSSDEDERGEIADFG 348

  Fly   420 ---CTEALDLNASDESLAKSDNVNKGQQ 444
               |.:.:.|:.:.|:|...:: |||.:
 Frog   349 AMGCVDIMPLDVALENLNLKES-NKGNE 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kcmf1NP_001163560.1 ZZ_PCMF_like 7..55 CDD:239078 37/47 (79%)
zf-Di19 76..137 CDD:310299 43/60 (72%)
kcmf1NP_001116279.1 ZZ_PCMF_like 7..55 CDD:239078 37/47 (79%)
zf-Di19 77..136 CDD:368517 41/58 (71%)
Di19_C <267..328 CDD:373137 31/119 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6380
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004459
OrthoInspector 1 1.000 - - oto103022
Panther 1 1.100 - - LDO PTHR12268
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2931
SonicParanoid 1 1.000 - - X4843
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.040

Return to query results.
Submit another query.