DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta3 and psmb13a

DIOPT Version :10

Sequence 1:NP_649858.1 Gene:Prosbeta3 / 41079 FlyBaseID:FBgn0026380 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_571752.2 Gene:psmb13a / 64280 ZFINID:ZDB-GENE-001208-2 Length:281 Species:Danio rerio


Alignment Length:195 Identity:35/195 - (17%)
Similarity:73/195 - (37%) Gaps:18/195 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDRLMFRKN 72
            |..:..:..||.|.:..|.|.............|:.:|.|.::....|...|.....|.|.....
Zfish    44 GTTIAGVVFKDGVVLGADTRATSDEVVADKMCAKIHYIAPNIYCCGAGTAADTEKTTDMLSSNLT 108

  Fly    73 LYETRENREMCPKPFSA--MMSSFLYEHRFGPYFIEPVVAGLDPK-----TMEPFICNMDLIGCP 130
            ::.....|.  |:...|  ::...|:.:. |......::.|:|..     |:.|: .:||.:   
Zfish   109 IFSMNSGRN--PRVVMAVNIIQDMLFRYH-GMIGANLILGGVDCTGSHLYTVGPY-GSMDKV--- 166

  Fly   131 NAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGATVYIIEKDKI 195
                .::..|:......|:.|..:|.:::.:|...:::.:|......|..||....:.:|.|:.:
Zfish   167 ----PYLAMGSGDLAAMGILEDRFKVNMDLEQAKALVSDAIQAGIMCDLGSGNNIDLCVITKEGV 227

  Fly   196  195
            Zfish   228  227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta3NP_649858.1 proteasome_beta_type_3 6..201 CDD:239728 35/195 (18%)
psmb13aNP_571752.2 proteasome_beta_type_7 45..233 CDD:239732 34/194 (18%)
Pr_beta_C 241..272 CDD:463597
Blue background indicates that the domain is not in the aligned region.

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