DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta3 and Psma8

DIOPT Version :9

Sequence 1:NP_649858.1 Gene:Prosbeta3 / 41079 FlyBaseID:FBgn0026380 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001102354.1 Gene:Psma8 / 364814 RGDID:1311659 Length:250 Species:Rattus norvegicus


Alignment Length:110 Identity:20/110 - (18%)
Similarity:39/110 - (35%) Gaps:5/110 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTD----ILTVRDRLM 68
            |...|.:||.:.|.:..:.:...:.|...| .:|:..:...:.:...||..|    |...|....
  Rat    31 GSTAVGIRGTNIVVLGVEKKSVAKLQDERT-VRKICALDDHVCMAFAGLTADARVVISRARVECQ 94

  Fly    69 FRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLD 113
            ..|...|.....|...:..:.:...:...:...|:.|..::.|.|
  Rat    95 SHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFD 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta3NP_649858.1 proteasome_beta_type_3 6..201 CDD:239728 20/110 (18%)
Psma8NP_001102354.1 PRK03996 5..234 CDD:235192 20/110 (18%)
proteasome_alpha_type_7 5..213 CDD:239724 20/110 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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